BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0556800 Os09g0556800|AK101051
         (503 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os09g0556800  Conserved hypothetical protein                      828   0.0  

>Os09g0556800 Conserved hypothetical protein
          Length = 503

 Score =  828 bits (2140), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 421/503 (83%), Positives = 421/503 (83%)

Query: 1   MGYTYTPTYYSGLHDTIASLCKSILPFGGFRSGRRLTXXXXXXXXXXXXLKWQQESFHRI 60
           MGYTYTPTYYSGLHDTIASLCKSILPFGGFRSGRRLT            LKWQQESFHRI
Sbjct: 1   MGYTYTPTYYSGLHDTIASLCKSILPFGGFRSGRRLTADQAAARRHADALKWQQESFHRI 60

Query: 61  LHLSALHREGIVPPSDVDAFRADMLXXXXXXXXXXXXXXXXXILRDKLLFLQELLYAKCI 120
           LHLSALHREGIVPPSDVDAFRADML                 ILRDKLLFLQELLYAKCI
Sbjct: 61  LHLSALHREGIVPPSDVDAFRADMLATLAAAPPPPAHPDQPAILRDKLLFLQELLYAKCI 120

Query: 121 SAAEYNSTKSPLVQRLAAFXXXXXXXXXXXXXXXXXXXXXXXXXXSMEEWSEIDLRDXXX 180
           SAAEYNSTKSPLVQRLAAF                          SMEEWSEIDLRD   
Sbjct: 121 SAAEYNSTKSPLVQRLAAFGVVVDCPDADVGDGGAASAAAPASSSSMEEWSEIDLRDPPP 180

Query: 181 XXXXSDKPKHKAFVPPWKSRGKKELDASRPPLAPVDQNNSKNAPSVLMAESSPSEAMPTA 240
               SDKPKHKAFVPPWKSRGKKELDASRPPLAPVDQNNSKNAPSVLMAESSPSEAMPTA
Sbjct: 181 AAAASDKPKHKAFVPPWKSRGKKELDASRPPLAPVDQNNSKNAPSVLMAESSPSEAMPTA 240

Query: 241 KTDKGKRRHLTAMFHNGGNGSENKEPPAASMEGTDQEKDAXXXXXXXXWGFDGLKKWKKA 300
           KTDKGKRRHLTAMFHNGGNGSENKEPPAASMEGTDQEKDA        WGFDGLKKWKKA
Sbjct: 241 KTDKGKRRHLTAMFHNGGNGSENKEPPAASMEGTDQEKDASKSKKKSSWGFDGLKKWKKA 300

Query: 301 SNDEATAGGERPEHAAPRSSYSECRLEASPXXXXXXXXXXXXLNTATGDDDSASDLANDK 360
           SNDEATAGGERPEHAAPRSSYSECRLEASP            LNTATGDDDSASDLANDK
Sbjct: 301 SNDEATAGGERPEHAAPRSSYSECRLEASPAVAKDAKRAKKKLNTATGDDDSASDLANDK 360

Query: 361 VLVENTKKELSRIQAELSSTNRNLNFSDQQIEAISTRLPVDKSDLKTFFPKAWCDEHGDN 420
           VLVENTKKELSRIQAELSSTNRNLNFSDQQIEAISTRLPVDKSDLKTFFPKAWCDEHGDN
Sbjct: 361 VLVENTKKELSRIQAELSSTNRNLNFSDQQIEAISTRLPVDKSDLKTFFPKAWCDEHGDN 420

Query: 421 VINVAKKEFKEHVEEMEKQRDITGGGDGWVAFGDSHDENFNPRAFSQHQAAVKGNVHDSL 480
           VINVAKKEFKEHVEEMEKQRDITGGGDGWVAFGDSHDENFNPRAFSQHQAAVKGNVHDSL
Sbjct: 421 VINVAKKEFKEHVEEMEKQRDITGGGDGWVAFGDSHDENFNPRAFSQHQAAVKGNVHDSL 480

Query: 481 SSSQHFTNPFYDEKNPFLTPSYD 503
           SSSQHFTNPFYDEKNPFLTPSYD
Sbjct: 481 SSSQHFTNPFYDEKNPFLTPSYD 503



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.312    0.129    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 16,406,840
Number of extensions: 641845
Number of successful extensions: 1742
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1740
Number of HSP's successfully gapped: 1
Length of query: 503
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 398
Effective length of database: 11,553,331
Effective search space: 4598225738
Effective search space used: 4598225738
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 158 (65.5 bits)