BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0555300 Os09g0555300|Os09g0555300
(584 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os09g0555300 Cyclin-like F-box domain containing protein 810 0.0
>Os09g0555300 Cyclin-like F-box domain containing protein
Length = 584
Score = 810 bits (2093), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 427/584 (73%), Positives = 427/584 (73%)
Query: 1 MPRALQRSGSNSLAALLRADPPPNAAIADQDDAKRPGXXXXXXXXSCLRLPLXXXXXXXX 60
MPRALQRSGSNSLAALLRADPPPNAAIADQDDAKRPG SCLRLPL
Sbjct: 1 MPRALQRSGSNSLAALLRADPPPNAAIADQDDAKRPGRRRRRRRRSCLRLPLGVGAGGCR 60
Query: 61 XXXXDEMDXXXXXXXXXXXXXXXXXXXXXXXXXXXXLQCFSWKKGAAAARTSGVGDGDRV 120
DEMD LQCFSWKKGAAAARTSGVGDGDRV
Sbjct: 61 VCACDEMDPATAAPRRRAPEEKDDDEEEEEAVPPAALQCFSWKKGAAAARTSGVGDGDRV 120
Query: 121 MXXXXXXXXXXXXXXPDDLMEMVLGXXXXXXXXXXXXXXXXWRDLTVAPQFMRMRRVEAR 180
M PDDLMEMVLG WRDLTVAPQFMRMRRVEAR
Sbjct: 121 MVEEVEAAAASLSVLPDDLMEMVLGRLPLASLLAARCACRRWRDLTVAPQFMRMRRVEAR 180
Query: 181 PHRTPWLFLFGVEGDGWGXXXXXXXXXXXXXXXQRWRRVGADGLRGRFLFSVAGVGDELY 240
PHRTPWLFLFGVEGDGWG QRWRRVGADGLRGRFLFSVAGVGDELY
Sbjct: 181 PHRTPWLFLFGVEGDGWGATAAATAVHALDVDAQRWRRVGADGLRGRFLFSVAGVGDELY 240
Query: 241 VVGGRSGDAGSVKTKTHKGVLVYSPLAGXXXXXXXXXXXXXXXVLGVFEMGTISRSILLA 300
VVGGRSGDAGSVKTKTHKGVLVYSPLAG VLGVFEMGTISRSILLA
Sbjct: 241 VVGGRSGDAGSVKTKTHKGVLVYSPLAGAWRKAASMRSARSRSVLGVFEMGTISRSILLA 300
Query: 301 RADKHVHRHANTGGGKFRLGGTSAVYEXXXXXXXXXXXXXXXXXXXXXSSEFAATDAKVA 360
RADKHVHRHANTGGGKFRLGGTSAVYE SSEFAATDAKVA
Sbjct: 301 RADKHVHRHANTGGGKFRLGGTSAVYEDPHRLSLRRLRLRDVLNDDADSSEFAATDAKVA 360
Query: 361 GQEEERRAQQRLALIAVGGRGRWDEPLVSGEIYDPVTDKWFEIAGFPADVGLACSGAVCG 420
GQEEERRAQQRLALIAVGGRGRWDEPLVSGEIYDPVTDKWFEIAGFPADVGLACSGAVCG
Sbjct: 361 GQEEERRAQQRLALIAVGGRGRWDEPLVSGEIYDPVTDKWFEIAGFPADVGLACSGAVCG 420
Query: 421 QMFYVYCESDTLVAYHLDKGFWSVIQTSRPPPRLRDYAPTXXXXXXXXXXXXXXWCDRAG 480
QMFYVYCESDTLVAYHLDKGFWSVIQTSRPPPRLRDYAPT WCDRAG
Sbjct: 421 QMFYVYCESDTLVAYHLDKGFWSVIQTSRPPPRLRDYAPTLLCCSSRLLMLCVSWCDRAG 480
Query: 481 NGSASRRERVMRKLFELDLGSRRWGEASSHPDAPMDLNAAFAAGADTVYAVEMFRVFGKV 540
NGSASRRERVMRKLFELDLGSRRWGEASSHPDAPMDLNAAFAAGADTVYAVEMFRVFGKV
Sbjct: 481 NGSASRRERVMRKLFELDLGSRRWGEASSHPDAPMDLNAAFAAGADTVYAVEMFRVFGKV 540
Query: 541 LDFVTACRVSDTDDHRWXXXXXXXXXXXXXXMSSKLKSMAVLHL 584
LDFVTACRVSDTDDHRW MSSKLKSMAVLHL
Sbjct: 541 LDFVTACRVSDTDDHRWRRLARNNAAADADAMSSKLKSMAVLHL 584
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.137 0.431
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 16,161,752
Number of extensions: 566921
Number of successful extensions: 1298
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1295
Number of HSP's successfully gapped: 1
Length of query: 584
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 478
Effective length of database: 11,501,117
Effective search space: 5497533926
Effective search space used: 5497533926
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 159 (65.9 bits)