BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0553600 Os09g0553600|AK068240
         (371 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os09g0553600  Similar to NADC homolog                             696   0.0  

>Os09g0553600 Similar to NADC homolog
          Length = 371

 Score =  696 bits (1797), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 344/357 (96%), Positives = 344/357 (96%)

Query: 15  VLQLAPRLRGLVXXXXXXXXXXXXXNRLRLRLPRAASMSAEARVPVAPPAHPTYDLKAVI 74
           VLQLAPRLRGLV             NRLRLRLPRAASMSAEARVPVAPPAHPTYDLKAVI
Sbjct: 15  VLQLAPRLRGLVSFPSSYSSSSPFSNRLRLRLPRAASMSAEARVPVAPPAHPTYDLKAVI 74

Query: 75  NLALSEDAGDRGDVSCLATIPSDVKAEATFIAKEDGVVAGISLADMIFKQVDPSLKVEWF 134
           NLALSEDAGDRGDVSCLATIPSDVKAEATFIAKEDGVVAGISLADMIFKQVDPSLKVEWF
Sbjct: 75  NLALSEDAGDRGDVSCLATIPSDVKAEATFIAKEDGVVAGISLADMIFKQVDPSLKVEWF 134

Query: 135 ESDGNYVHKGLQFGRVYGCARNIIVAERVVLNFMQRMSGIATMTKAMADAAHPACILETR 194
           ESDGNYVHKGLQFGRVYGCARNIIVAERVVLNFMQRMSGIATMTKAMADAAHPACILETR
Sbjct: 135 ESDGNYVHKGLQFGRVYGCARNIIVAERVVLNFMQRMSGIATMTKAMADAAHPACILETR 194

Query: 195 KTAPGLRLVDKWAVLIGGGKNHRIGLFDMVMIKDNHISVAGGITNAMKFVDRFLAKEKLA 254
           KTAPGLRLVDKWAVLIGGGKNHRIGLFDMVMIKDNHISVAGGITNAMKFVDRFLAKEKLA
Sbjct: 195 KTAPGLRLVDKWAVLIGGGKNHRIGLFDMVMIKDNHISVAGGITNAMKFVDRFLAKEKLA 254

Query: 255 LPVEVETRTLQEVKDLLEYAAENNTSLTRIMLDNMVVPLGNGDIDVSMLKDAVELINGRF 314
           LPVEVETRTLQEVKDLLEYAAENNTSLTRIMLDNMVVPLGNGDIDVSMLKDAVELINGRF
Sbjct: 255 LPVEVETRTLQEVKDLLEYAAENNTSLTRIMLDNMVVPLGNGDIDVSMLKDAVELINGRF 314

Query: 315 ETEASGNVTIDTVKKIGETGVTYISSGALTHSVKALDISLKIDTELALQVGRRTNRA 371
           ETEASGNVTIDTVKKIGETGVTYISSGALTHSVKALDISLKIDTELALQVGRRTNRA
Sbjct: 315 ETEASGNVTIDTVKKIGETGVTYISSGALTHSVKALDISLKIDTELALQVGRRTNRA 371



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.320    0.135    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,538,644
Number of extensions: 407751
Number of successful extensions: 1121
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1121
Number of HSP's successfully gapped: 1
Length of query: 371
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 269
Effective length of database: 11,709,973
Effective search space: 3149982737
Effective search space used: 3149982737
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 157 (65.1 bits)