Os09g0553600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to NADC homolog.
FiT-DB / Search/ Help/ Sample detail
|
Os09g0553600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to NADC homolog.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 125.49 | 0.526 | 7.86 | -1.07 | 1.11 | 0.969 | 0.207 | 1.27 | -1.01 | 15.6 | 70.8 | 4570 | -- | -- |
| 127.28 | 0.525 | 7.86 | -1.1 | 1.09 | 1.11 | 0.295 | -- | -1.01 | 15.6 | 69.9 | 4573 | -- | -- |
| 125.62 | 0.522 | 7.86 | -1.06 | 1.11 | 0.964 | -- | 1.31 | -1.01 | 15.6 | 70.86 | 4570 | -- | -- |
| 125.82 | 0.522 | 7.88 | -1.01 | 1.14 | 1.04 | -- | -- | -1.11 | 15.5 | 71 | 7383 | -- | -- |
| 165.9 | 0.603 | 7.83 | -1.24 | -- | 0.727 | -- | 0.0486 | -0.939 | -- | 74 | 4721 | -- | -- |
| 144.23 | 0.563 | 7.83 | -1.14 | 1.16 | -- | 0.18 | -- | -0.903 | 15.6 | -- | -- | -- | -- |
| 144.33 | 0.563 | 7.83 | -1.13 | 1.16 | -- | -- | -- | -0.902 | 15.6 | -- | -- | -- | -- |
| 165.91 | 0.603 | 7.83 | -1.24 | -- | 0.727 | -- | -- | -0.939 | -- | 74 | 4721 | -- | -- |
| 153.05 | 0.576 | 7.87 | -- | 1.15 | 1.19 | -- | -- | -1.07 | 15.6 | 71 | 7375 | -- | -- |
| 219.48 | 0.692 | 7.83 | -1.18 | -- | -- | -- | -- | -0.933 | -- | -- | -- | -- | -- |
| 178.11 | 0.624 | 7.8 | -- | 1.18 | -- | -- | -- | -0.776 | 15.6 | -- | -- | -- | -- |
| 206.35 | 0.671 | 7.8 | -- | -- | 0.701 | -- | -- | -0.802 | -- | 73 | 4703 | -- | -- |
| 256.26 | 0.747 | 7.8 | -- | -- | -- | -- | -- | -0.802 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 122.02 | temperature | 25 | 30 | > th | dose dependent | rect. | 18 | 14 |
| 7 | 124.05 | humidity | 80 | 4320 | > th | dose independent | rect. | 9 | 1 |
| 8 | 124.38 | temperature | 25 | 90 | > th | dose independent | rect. | 17 | 15 |
| 10 | 124.42 | humidity | 80 | 4320 | < th | dose independent | rect. | 8 | 3 |
| 11 | 124.44 | humidity | 80 | 4320 | > th | dose independent | rect. | 8 | 3 |
| 12 | 124.67 | humidity | 60 | 4320 | > th | dose dependent | rect. | 10 | 2 |
| 13 | 124.78 | humidity | 80 | 4320 | < th | dose independent | rect. | 9 | 1 |
| 18 | 124.92 | humidity | 60 | 14400 | < th | dose independent | rect. | 10 | 4 |
| 23 | 125.06 | humidity | 70 | 14400 | > th | dose independent | rect. | 20 | 14 |
| 26 | 125.11 | humidity | 60 | 14400 | < th | dose independent | rect. | 17 | 21 |
| 27 | 125.15 | humidity | 80 | 4320 | < th | dose dependent | rect. | 11 | 1 |
| 28 | 125.16 | humidity | 70 | 14400 | > th | dose independent | rect. | 3 | 7 |
| 35 | 125.18 | humidity | 70 | 14400 | > th | dose independent | rect. | 23 | 11 |
| 43 | 125.22 | humidity | 70 | 4320 | > th | dose dependent | rect. | 6 | 5 |
| 44 | 125.22 | humidity | 60 | 4320 | > th | dose dependent | rect. | 5 | 7 |
| 50 | 125.34 | humidity | 60 | 14400 | < th | dose independent | rect. | 7 | 7 |
| 64 | 125.35 | humidity | 80 | 4320 | < th | dose independent | rect. | 18 | 18 |
| 72 | 125.45 | humidity | 80 | 4320 | > th | dose independent | rect. | 18 | 18 |
| 89 | 125.58 | humidity | 70 | 4320 | < th | dose independent | rect. | 7 | 10 |
| 116 | 125.70 | wind | 1 | 14400 | < th | dose independent | rect. | 2 | 6 |
| 124 | 125.73 | humidity | 70 | 14400 | < th | dose independent | rect. | 20 | 14 |
| 140 | 125.77 | humidity | 90 | 4320 | < th | dose dependent | rect. | 20 | 18 |
| 181 | 125.88 | humidity | 90 | 4320 | < th | dose dependent | rect. | 9 | 5 |
| 183 | 125.90 | wind | 1 | 14400 | > th | dose independent | rect. | 2 | 6 |
| 186 | 125.91 | humidity | 60 | 14400 | > th | dose independent | rect. | 16 | 22 |
| 223 | 126.03 | humidity | 70 | 4320 | < th | dose independent | sin | 3 | NA |
| 231 | 126.04 | humidity | 90 | 4320 | < th | dose dependent | rect. | 5 | 9 |
| 239 | 126.06 | humidity | 70 | 4320 | > th | dose independent | rect. | 3 | 11 |
| 251 | 126.08 | humidity | 70 | 4320 | > th | dose independent | rect. | 23 | 15 |
| 257 | 126.09 | humidity | 70 | 4320 | > th | dose independent | sin | 3 | NA |
| 263 | 126.10 | humidity | 70 | 4320 | > th | dose independent | rect. | 7 | 10 |
| 264 | 126.10 | humidity | 70 | 4320 | > th | dose independent | rect. | 3 | 14 |
| 274 | 126.11 | humidity | 70 | 4320 | > th | dose independent | rect. | 23 | 18 |
| 292 | 126.12 | humidity | 50 | 4320 | > th | dose dependent | sin | 4 | NA |
| 321 | 126.18 | humidity | 60 | 14400 | < th | dose independent | rect. | 10 | 23 |
| 346 | 126.22 | humidity | 70 | 4320 | < th | dose independent | rect. | 16 | 1 |
| 418 | 126.27 | humidity | 60 | 14400 | > th | dose independent | rect. | 10 | 23 |
| 456 | 126.29 | humidity | 90 | 4320 | < th | dose dependent | sin | 4 | NA |
| 489 | 126.34 | wind | 1 | 14400 | < th | dose independent | rect. | 4 | 4 |
| 537 | 126.39 | humidity | 60 | 14400 | < th | dose dependent | sin | 14 | NA |
| 554 | 126.41 | humidity | 60 | 14400 | > th | dose independent | rect. | 10 | 12 |
| 556 | 126.41 | humidity | 60 | 14400 | > th | dose independent | rect. | 10 | 14 |
| 587 | 126.43 | humidity | 90 | 4320 | < th | dose independent | rect. | 7 | 1 |
| 675 | 126.49 | humidity | 60 | 14400 | < th | dose independent | no | NA | NA |
| 747 | 126.52 | humidity | 60 | 14400 | < th | dose dependent | rect. | 12 | 8 |
| 764 | 126.53 | humidity | 60 | 14400 | < th | dose dependent | rect. | 13 | 1 |
| 885 | 126.57 | humidity | 60 | 14400 | > th | dose independent | rect. | 23 | 23 |
| 888 | 126.58 | humidity | 60 | 14400 | > th | dose independent | no | NA | NA |
| 889 | 126.58 | temperature | 30 | 1440 | > th | dose independent | rect. | 13 | 1 |
| 913 | 126.58 | wind | 1 | 14400 | < th | dose dependent | rect. | 2 | 1 |