BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0545400 Os09g0545400|AK064274
         (85 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os09g0545400  Similar to Auxin induced protein                    166   5e-42
Os09g0545800                                                       92   1e-19
Os09g0546600                                                       74   2e-14

>Os09g0545400 Similar to Auxin induced protein
          Length = 85

 Score =  166 bits (419), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 85/85 (100%), Positives = 85/85 (100%)

Query: 1  MTYSITAASQGSVILPSPANPNSSCDILRSSPKTVVPRYGNGTLNRLPSAVYMVQRPLSA 60
          MTYSITAASQGSVILPSPANPNSSCDILRSSPKTVVPRYGNGTLNRLPSAVYMVQRPLSA
Sbjct: 1  MTYSITAASQGSVILPSPANPNSSCDILRSSPKTVVPRYGNGTLNRLPSAVYMVQRPLSA 60

Query: 61 TGEVVQQASSSLAAVVLTLCSLLAS 85
          TGEVVQQASSSLAAVVLTLCSLLAS
Sbjct: 61 TGEVVQQASSSLAAVVLTLCSLLAS 85



>Os09g0545800 
          Length = 114

 Score = 91.7 bits (226), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 53/95 (55%), Positives = 65/95 (68%), Gaps = 10/95 (10%)

Query: 1   MTYSITAASQGSVILPS-PANPNSSCDILRSSPKTVVPRYGNGTLNRLPSAVYMVQRPLS 59
           MTYSIT AS G+VILPS PA PNSS D++RSSPK+ VPRYGNGT NR PSAVY  Q PL 
Sbjct: 20  MTYSITDASHGNVILPSSPAKPNSSRDMVRSSPKSGVPRYGNGTSNRAPSAVYTAQWPLP 79

Query: 60  ATGE--VVQQASSSLAAV-------VLTLCSLLAS 85
           A     V+QQ+S++  A         + +C+ LA+
Sbjct: 80  ARDRDAVLQQSSAATTAFCRLPPADAILICNFLAN 114



>Os09g0546600 
          Length = 94

 Score = 74.3 bits (181), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 38/50 (76%), Positives = 41/50 (82%), Gaps = 1/50 (2%)

Query: 2  TYSITAASQGSVILPS-PANPNSSCDILRSSPKTVVPRYGNGTLNRLPSA 50
          TYSIT AS G+VILPS PA PNSS D++RSSPKT VPRY NGT NR PSA
Sbjct: 21 TYSITDASHGNVILPSSPAKPNSSRDMVRSSPKTAVPRYSNGTSNRAPSA 70



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.312    0.124    0.339 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,838,412
Number of extensions: 107796
Number of successful extensions: 230
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 228
Number of HSP's successfully gapped: 3
Length of query: 85
Length of database: 17,035,801
Length adjustment: 55
Effective length of query: 30
Effective length of database: 14,164,031
Effective search space: 424920930
Effective search space used: 424920930
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 149 (62.0 bits)