Os09g0545400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Auxin induced protein.
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Os09g0545400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Auxin induced protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 253.18 | 0.748 | 5.54 | 3.03 | 3.52 | 2.47 | 3.17 | 1.01 | 1.01 | 21.4 | 77.77 | 1087 | 10.9 | 17.1 |
| 253.34 | 0.741 | 5.54 | 3.07 | 3.51 | 2.47 | 2.93 | -- | 1.01 | 21.5 | 78 | 1118 | 11.2 | 16.8 |
| 282.87 | 0.783 | 5.54 | 2.98 | 3.68 | 2.66 | -- | -1.61 | 1.02 | 21.4 | 76.93 | 1089 | 11.8 | 17.1 |
| 284.61 | 0.786 | 5.54 | 2.98 | 3.48 | 2.46 | -- | -- | 1.02 | 21.5 | 77.53 | 1127 | 11.2 | 16.8 |
| 490.55 | 1.04 | 5.48 | 3.02 | -- | 1.73 | -- | 1.18 | 0.877 | -- | 68.47 | 3171 | 12.1 | 17.4 |
| 323.15 | 0.843 | 5.54 | 3.05 | 2.89 | -- | 2.85 | -- | 0.944 | 21.6 | -- | -- | -- | -- |
| 353.6 | 0.881 | 5.54 | 2.94 | 2.87 | -- | -- | -- | 0.938 | 21.7 | -- | -- | -- | -- |
| 477.21 | 1.02 | 5.81 | 3.44 | -- | 2.97 | -- | -- | 0.36 | -- | 39.01 | 3098 | 11.7 | 17.1 |
| 513.11 | 1.06 | 5.6 | -- | 3.51 | 2.37 | -- | -- | 0.645 | 21.6 | 78.62 | 1110 | 12 | 16.2 |
| 844.16 | 1.36 | 5.46 | 2.96 | -- | -- | -- | -- | 0.933 | -- | -- | -- | -- | -- |
| 581.21 | 1.13 | 5.62 | -- | 2.88 | -- | -- | -- | 0.61 | 21.8 | -- | -- | -- | -- |
| 504.46 | 1.05 | 5.65 | -- | -- | 2.86 | -- | -- | 0.223 | -- | 31.78 | 34773 | 11.9 | 15.3 |
| 1075.95 | 1.53 | 5.54 | -- | -- | -- | -- | -- | 0.605 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 258.45 | humidity | 60.0 | 720 | > th | dose dependent | rect. | 14 | 13 |
| 35 | 264.29 | humidity | 60.0 | 720 | > th | dose dependent | sin | 15 | NA |
| 71 | 267.01 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 17 | 9 |
| 79 | 267.24 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 12 | 14 |
| 96 | 267.84 | humidity | 90.0 | 720 | > th | dose dependent | sin | 18 | NA |
| 132 | 269.16 | humidity | 80.0 | 720 | > th | dose independent | rect. | 11 | 16 |
| 148 | 269.83 | humidity | 90.0 | 720 | < th | dose independent | rect. | 18 | 6 |
| 149 | 269.83 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 20 | 1 |
| 236 | 272.14 | humidity | 80.0 | 720 | < th | dose independent | rect. | 12 | 14 |
| 283 | 273.16 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 19 | 5 |
| 309 | 273.70 | temperature | 20.0 | 90 | > th | dose independent | rect. | 13 | 15 |
| 319 | 273.83 | humidity | 80.0 | 720 | > th | dose independent | sin | 17 | NA |
| 336 | 274.20 | humidity | 60.0 | 720 | > th | dose dependent | rect. | 14 | 7 |
| 374 | 274.86 | humidity | 70.0 | 1440 | < th | dose independent | rect. | 12 | 6 |
| 380 | 274.89 | temperature | 20.0 | 10 | > th | dose independent | rect. | 15 | 14 |
| 392 | 275.10 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 11 | 3 |
| 402 | 275.28 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 12 | 7 |
| 411 | 275.48 | humidity | 90.0 | 720 | > th | dose independent | rect. | 18 | 8 |
| 439 | 275.83 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 19 | 2 |
| 456 | 275.97 | humidity | 80.0 | 720 | < th | dose independent | sin | 17 | NA |
| 485 | 276.37 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 11 | 3 |
| 508 | 276.65 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 7 | 10 |
| 519 | 276.75 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 20 | 8 |
| 523 | 276.78 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 11 | 3 |
| 537 | 276.92 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 12 | 10 |
| 563 | 277.04 | humidity | 90.0 | 720 | < th | dose independent | rect. | 19 | 1 |
| 567 | 277.06 | humidity | 80.0 | 720 | > th | dose independent | rect. | 14 | 7 |
| 615 | 277.45 | humidity | 70.0 | 1440 | < th | dose independent | rect. | 15 | 2 |
| 622 | 277.50 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 12 | 1 |
| 660 | 277.96 | humidity | 70.0 | 1440 | < th | dose independent | rect. | 12 | 1 |
| 723 | 278.49 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 18 | 10 |
| 729 | 278.54 | humidity | 60.0 | 1440 | > th | dose dependent | rect. | 12 | 1 |
| 730 | 278.56 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 9 | 8 |
| 755 | 278.68 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 12 | 5 |
| 799 | 278.95 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 9 | 11 |
| 828 | 279.19 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 9 | 7 |
| 861 | 279.45 | temperature | 20.0 | 10 | > th | dose independent | rect. | 24 | 5 |
| 880 | 279.63 | temperature | 20.0 | 270 | > th | dose independent | rect. | 23 | 3 |
| 903 | 279.80 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 908 | 279.80 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 909 | 279.81 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 12 | 18 |
| 928 | 279.90 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 23 | 21 |
| 966 | 280.08 | humidity | 80.0 | 1440 | > th | dose independent | sin | 22 | NA |
| 999 | 280.23 | humidity | 90.0 | 720 | < th | dose dependent | sin | 14 | NA |