BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0538700 Os09g0538700|Os09g0538700
         (311 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os09g0538700  Glutelin family protein                             208   5e-54

>Os09g0538700 Glutelin family protein
          Length = 311

 Score =  208 bits (529), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 109/182 (59%), Positives = 109/182 (59%)

Query: 130 WDFWDPFAPSSSRSXXXXXXXXXXXXXIVDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 189
           WDFWDPFAPSSSRS             IVD                              
Sbjct: 130 WDFWDPFAPSSSRSATEDAEWDDAATTIVDAPNAPPVVTVAAAAAPPPSVVTATTTTSTA 189

Query: 190 XXXXXXXXPRXXXXXXKKDLAEIATELDEYFXXXXXXXXXXXXXXXXPNCEPPETNNSSF 249
                   PR      KKDLAEIATELDEYF                PNCEPPETNNSSF
Sbjct: 190 SELTVVAVPRGGGGAGKKDLAEIATELDEYFLKAADAGARVAALLEAPNCEPPETNNSSF 249

Query: 250 PGKTISKSVTRLSSILLTFHLFLTNYLLHATEIDECCREGTELRQELEADGMVMGRKRVQ 309
           PGKTISKSVTRLSSILLTFHLFLTNYLLHATEIDECCREGTELRQELEADGMVMGRKRVQ
Sbjct: 250 PGKTISKSVTRLSSILLTFHLFLTNYLLHATEIDECCREGTELRQELEADGMVMGRKRVQ 309

Query: 310 QR 311
           QR
Sbjct: 310 QR 311




 Score = 72.4 bits (176), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 34/34 (100%), Positives = 34/34 (100%)

Query: 1  MGLCQSRLERQEAVSRCKARRRYTKQLVQARRDM 34
          MGLCQSRLERQEAVSRCKARRRYTKQLVQARRDM
Sbjct: 1  MGLCQSRLERQEAVSRCKARRRYTKQLVQARRDM 34



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.321    0.133    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,315,683
Number of extensions: 96470
Number of successful extensions: 195
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 193
Number of HSP's successfully gapped: 2
Length of query: 311
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 210
Effective length of database: 11,762,187
Effective search space: 2470059270
Effective search space used: 2470059270
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 156 (64.7 bits)