BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0537200 Os09g0537200|AK100556
(586 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os09g0537200 Conserved hypothetical protein 1155 0.0
Os09g0554600 567 e-162
Os09g0551350 216 6e-56
>Os09g0537200 Conserved hypothetical protein
Length = 586
Score = 1155 bits (2987), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 566/586 (96%), Positives = 566/586 (96%)
Query: 1 MVVADNGKWALEKARALQDLEEEFNQQIARILSCYQLPDHIRLDLHEQHRNDYKVPDDLR 60
MVVADNGKWALEKARALQDLEEEFNQQIARILSCYQLPDHIRLDLHEQHRNDYKVPDDLR
Sbjct: 1 MVVADNGKWALEKARALQDLEEEFNQQIARILSCYQLPDHIRLDLHEQHRNDYKVPDDLR 60
Query: 61 LKFVNAVFEGKSGMLDQDEELRVQARKESEKFWVEXXXXXXXXXXLQDMEERNRQLFFKH 120
LKFVNAVFEGKSGMLDQDEELRVQARKESEKFWVE LQDMEERNRQLFFKH
Sbjct: 61 LKFVNAVFEGKSGMLDQDEELRVQARKESEKFWVEAAGAAKKAQALQDMEERNRQLFFKH 120
Query: 121 YPGVQDMPDHIREYCFRKFMEDARDEVEVRFGIRNHEMRLRIRAWEESQQFLIKTMADGR 180
YPGVQDMPDHIREYCFRKFMEDARDEVEVRFGIRNHEMRLRIRAWEESQQFLIKTMADGR
Sbjct: 121 YPGVQDMPDHIREYCFRKFMEDARDEVEVRFGIRNHEMRLRIRAWEESQQFLIKTMADGR 180
Query: 181 AAKKVQTLQDEEKRYVQGVKKTFDSENISEYFQQAFLQQGLLDNIRLLFIDDIEEKFNMP 240
AAKKVQTLQDEEKRYVQGVKKTFDSENISEYFQQAFLQQGLLDNIRLLFIDDIEEKFNMP
Sbjct: 181 AAKKVQTLQDEEKRYVQGVKKTFDSENISEYFQQAFLQQGLLDNIRLLFIDDIEEKFNMP 240
Query: 241 DDEEEPKGYISEDYNRLKAQALQDLEYKFNQQTARILKRYDLPEHIRLDLQEQHYNNYKV 300
DDEEEPKGYISEDYNRLKAQALQDLEYKFNQQTARILKRYDLPEHIRLDLQEQHYNNYKV
Sbjct: 241 DDEEEPKGYISEDYNRLKAQALQDLEYKFNQQTARILKRYDLPEHIRLDLQEQHYNNYKV 300
Query: 301 PDNLRIKFINAVFNGNPRILDHKRELKVQARKEAEKFWIEXXXXXXXXXXLQDLEERYKQ 360
PDNLRIKFINAVFNGNPRILDHKRELKVQARKEAEKFWIE LQDLEERYKQ
Sbjct: 301 PDNLRIKFINAVFNGNPRILDHKRELKVQARKEAEKFWIEAAATAKKAQALQDLEERYKQ 360
Query: 361 QFIKPSYDREDISEHMQEYFLRERKITDKAYLEYKNNVEDKFAIRNHEMQLKFLAWEKTQ 420
QFIKPSYDREDISEHMQEYFLRERKITDKAYLEYKNNVEDKFAIRNHEMQLKFLAWEKTQ
Sbjct: 361 QFIKPSYDREDISEHMQEYFLRERKITDKAYLEYKNNVEDKFAIRNHEMQLKFLAWEKTQ 420
Query: 421 QFRIKMMADERAAKKVKALQDMEERYVQDYINKVERLDVPDYIKQGVIQEYKVPDGTRLR 480
QFRIKMMADERAAKKVKALQDMEERYVQDYINKVERLDVPDYIKQGVIQEYKVPDGTRLR
Sbjct: 421 QFRIKMMADERAAKKVKALQDMEERYVQDYINKVERLDVPDYIKQGVIQEYKVPDGTRLR 480
Query: 481 YINYIEEKFRMLDDQEERKVHIWENFKKLKIPLTIKSPITVAIMFSIGIMILFSGFLVPK 540
YINYIEEKFRMLDDQEERKVHIWENFKKLKIPLTIKSPITVAIMFSIGIMILFSGFLVPK
Sbjct: 481 YINYIEEKFRMLDDQEERKVHIWENFKKLKIPLTIKSPITVAIMFSIGIMILFSGFLVPK 540
Query: 541 MPKSLKIMCWATSIVICFAAVLSYDNESSKTTAPTEMHDLENPPSI 586
MPKSLKIMCWATSIVICFAAVLSYDNESSKTTAPTEMHDLENPPSI
Sbjct: 541 MPKSLKIMCWATSIVICFAAVLSYDNESSKTTAPTEMHDLENPPSI 586
>Os09g0554600
Length = 716
Score = 567 bits (1461), Expect = e-162, Method: Compositional matrix adjust.
Identities = 303/506 (59%), Positives = 371/506 (73%), Gaps = 16/506 (3%)
Query: 2 VVADNGKWALEKARALQDLEEEFNQQIARILSCYQLPDHIRLDLHEQHRNDYKVPDDLRL 61
+VAD KWALEKA+ALQDLEEEFNQQ A+IL+CYQLP H+RLDLHEQHRNDY VPDDLRL
Sbjct: 1 MVAD--KWALEKAQALQDLEEEFNQQTAKILTCYQLPKHLRLDLHEQHRNDYMVPDDLRL 58
Query: 62 KFVNAVFEGKSGMLDQDEELRVQARKESEKFWVEXXXXXXXXXXLQDMEERNRQLFFKHY 121
KFVNAVFEG MLD +E+L+ QARKE++KFW E LQDM+E QL H
Sbjct: 59 KFVNAVFEGNPRMLDHEEKLKAQARKEADKFWTEAAGAANKAQALQDMKEWYMQLLVNHA 118
Query: 122 PGVQDMPDHIREYCFRKFMEDA-----RDEVEVRFGIRNHEMRLRIRAWEESQQFLIKTM 176
++ +P+ I+E R+ D ++ VE +FGI NHE RLR+RAWEESQQF IKTM
Sbjct: 119 FDIEGIPERIKEAYIREIKLDDEELMFKNHVEKKFGICNHETRLRVRAWEESQQFRIKTM 178
Query: 177 ADGRAAKKVQTLQDEEKRYVQGVKKTFDSENISEYFQQAFLQQ-GLLDNIRLLFIDDIEE 235
AD AAKK+ LQD EK ++Q D +I +Y QQA+ Q+ + D++RL +I+ +E
Sbjct: 179 ADYWAAKKLHALQDLEKAHIQRFMNILDKIDIPDYVQQAYFQKYKVPDDLRLRYINHVEI 238
Query: 236 KFN-MPDDEEEP-KGYISEDYNRLKAQALQDLEYKFNQQTARILKRYDLPEHIRLDLQEQ 293
KF MPDDEEEP KGYISEDYN+LKAQALQDLE Q + ++ + QEQ
Sbjct: 239 KFRRMPDDEEEPPKGYISEDYNKLKAQALQDLEL---QGFSSVMTYLSTSGWVS---QEQ 292
Query: 294 HYNNYKVPDNLRIKFINAVFNGNPRILDHKRELKVQARKEAEKFWIEXXXXXXXXXXLQD 353
H N+YKVPDNLR+KFI AVF GN RILDHK ELKVQARKEAEKFWIE LQD
Sbjct: 293 HCNDYKVPDNLRVKFITAVFKGNSRILDHKGELKVQARKEAEKFWIEEAATEKKTQALQD 352
Query: 354 LEERYKQQFIKPSYDREDISEHMQEYFLRERKITDKAYLEYKNNVEDKFAIRNHEMQLKF 413
+EER+KQQFIK Y R+ I EH+QEY+L + K+ + L+++N+VE+KF +RNHEMQLK
Sbjct: 353 MEERFKQQFIKLGYARKGIPEHIQEYYLTDCKLHEDTLLKFRNDVEEKFEMRNHEMQLKI 412
Query: 414 LAWEKTQQFRIKMMADERAAKKVKALQDMEERYVQDYINKVERLDVPDYIKQGVIQEYKV 473
AWEKTQQFRI+MMAD+RAAKK KALQDMEERY+QD++N V++LDVP+Y +Q Q++KV
Sbjct: 413 RAWEKTQQFRIEMMADKRAAKKTKALQDMEERYIQDFMNIVDKLDVPEYFQQAYFQKFKV 472
Query: 474 PDGTRLRYINYIEEKFRMLDDQEERK 499
PD RLRYIN IEE+FRML D+E K
Sbjct: 473 PDDIRLRYINDIEEEFRMLGDKEGYK 498
Score = 202 bits (515), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 119/245 (48%), Positives = 157/245 (64%), Gaps = 13/245 (5%)
Query: 13 KARALQDLEEEFNQQIARILSCYQLPDHIRLDLHEQHRNDYKVPDDLRLKFVNAVFEGKS 72
KA+ALQDLE + + LS EQH NDYKVPD+LR+KF+ AVF+G S
Sbjct: 263 KAQALQDLELQGFSSVMTYLSTSGWVSQ------EQHCNDYKVPDNLRVKFITAVFKGNS 316
Query: 73 GMLDQDEELRVQARKESEKFWVEXXXXXXXXXXLQDMEERNRQLFFKHYPGVQDMPDHIR 132
+LD EL+VQARKE+EKFW+E LQDMEER +Q F K + +P+HI+
Sbjct: 317 RILDHKGELKVQARKEAEKFWIEEAATEKKTQALQDMEERFKQQFIKLGYARKGIPEHIQ 376
Query: 133 EYCFR--KFMEDA----RDEVEVRFGIRNHEMRLRIRAWEESQQFLIKTMADGRAAKKVQ 186
EY K ED R++VE +F +RNHEM+L+IRAWE++QQF I+ MAD RAAKK +
Sbjct: 377 EYYLTDCKLHEDTLLKFRNDVEEKFEMRNHEMQLKIRAWEKTQQFRIEMMADKRAAKKTK 436
Query: 187 TLQDEEKRYVQGVKKTFDSENISEYFQQAFLQQ-GLLDNIRLLFIDDIEEKFNMPDDEEE 245
LQD E+RY+Q D ++ EYFQQA+ Q+ + D+IRL +I+DIEE+F M D+E
Sbjct: 437 ALQDMEERYIQDFMNIVDKLDVPEYFQQAYFQKFKVPDDIRLRYINDIEEEFRMLGDKEG 496
Query: 246 PKGYI 250
K I
Sbjct: 497 YKPVI 501
Score = 110 bits (276), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 122/434 (28%), Positives = 218/434 (50%), Gaps = 48/434 (11%)
Query: 106 LQDMEERNRQLFFKHYPGVQDMPDHIREYCFRKFMED--ARDEVEVRF---------GIR 154
LQD+EE Q K Q +P H+R + D D++ ++F +
Sbjct: 14 LQDLEEEFNQQTAKILTCYQ-LPKHLRLDLHEQHRNDYMVPDDLRLKFVNAVFEGNPRML 72
Query: 155 NHEMRLRIRAWEESQQFLIKTMADGRAAKKVQTLQDEEKRYVQG-VKKTFDSENISEYFQ 213
+HE +L+ +A +E+ +F + AA K Q LQD ++ Y+Q V FD E I E +
Sbjct: 73 DHEEKLKAQARKEADKFWTEAAG---AANKAQALQDMKEWYMQLLVNHAFDIEGIPERIK 129
Query: 214 QAFLQQGLLDNIRLLFIDDIEEKFNMPDDE--------EEPKGY----ISEDYNRLKAQA 261
+A++++ LD+ L+F + +E+KF + + E EE + + +++ + K A
Sbjct: 130 EAYIREIKLDDEELMFKNHVEKKFGICNHETRLRVRAWEESQQFRIKTMADYWAAKKLHA 189
Query: 262 LQDLEYKFNQQTARILKRYDLPEHIRLDLQEQHYNNYKVPDNLRIKFINAVFNGNPRILD 321
LQDLE Q+ IL + D+P+++ Q+ ++ YKVPD+LR+++IN V R+ D
Sbjct: 190 LQDLEKAHIQRFMNILDKIDIPDYV----QQAYFQKYKVPDDLRLRYINHVEIKFRRMPD 245
Query: 322 HKRELKVQARKEAEKFWIEXXXXXXXXXXLQDLEERYKQQFIKPSYDREDISEHMQEYFL 381
+ +E K +I LQDLE + + +S QE
Sbjct: 246 DE--------EEPPKGYISEDYNKLKAQALQDLELQGFSSVMTYLSTSGWVS---QEQHC 294
Query: 382 RERKITDKAYLEYKNNV-EDKFAIRNHEMQLKFLAWEKTQQFRIKMMADERAAKKVKALQ 440
+ K+ D +++ V + I +H+ +LK A ++ ++F I+ A E KK +ALQ
Sbjct: 295 NDYKVPDNLRVKFITAVFKGNSRILDHKGELKVQARKEAEKFWIEEAATE---KKTQALQ 351
Query: 441 DMEERYVQDYIN-KVERLDVPDYIKQGVIQEYKVPDGTRLRYINYIEEKFRMLDDQEERK 499
DMEER+ Q +I R +P++I++ + + K+ + T L++ N +EEKF M + + + K
Sbjct: 352 DMEERFKQQFIKLGYARKGIPEHIQEYYLTDCKLHEDTLLKFRNDVEEKFEMRNHEMQLK 411
Query: 500 VHIWENFKKLKIPL 513
+ WE ++ +I +
Sbjct: 412 IRAWEKTQQFRIEM 425
>Os09g0551350
Length = 339
Score = 216 bits (549), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 136/301 (45%), Positives = 193/301 (64%), Gaps = 24/301 (7%)
Query: 262 LQDLEYKFNQQTARILKRYD--LPEHIRLDLQEQHYNNYKVPDNLRIKFINAVFNGNPRI 319
LQDLE +F QQTA IL YD LPEHIRLDLQEQH N++KVPD+L ++FINA F+GNP
Sbjct: 14 LQDLETRFIQQTATILGCYDHLLPEHIRLDLQEQHCNDHKVPDDLWLEFINAAFDGNPET 73
Query: 320 LDH---KRELKVQARKEAEKFWIEXXXXXXXXXXLQDLEERYKQQFIKPSYDR------E 370
LD +++L+V ARKEA+KFWIE L+++EER++Q+FIKP D+ E
Sbjct: 74 LDREGGEQQLEVHARKEADKFWIEAAGAAKKAQALKEMEERFRQEFIKPGLDKILLELVE 133
Query: 371 DISEHMQEYFLRER-KITDKAYLEYKNNVEDKFAIRNHEMQLKFLAWEKTQQFRIKMMAD 429
+ E+++E F R R +I D+ VE F + +HE +LK AWE++Q+FRI AD
Sbjct: 134 SLPENIREDFFRVRYEIVDEVQEILNERVEQNFGVGDHEKRLKIRAWEESQRFRIDAAAD 193
Query: 430 ERAAKKVKALQDMEERYVQDYINKVERLDVPDYIKQGVIQ---EYKVPDGTRLRYINYIE 486
+RAAKK++ LQDM++ ++ D +++ R P Y+KQ +I+ EY VP +LR+I+ IE
Sbjct: 194 KRAAKKLQPLQDMKKGFILDRLDRFLR-GSPKYVKQHLIREHTEYSVPADMQLRFIDDIE 252
Query: 487 EKFRMLDDQEERKVHIWENFKKLKIPLTIKSPITVAIMFSIGIMILFSGFLVPKMPKSLK 546
+FR +D QE K IWE +++ K+PL +S +TV +M S F VP K K
Sbjct: 253 RRFRKVDYQEVIKARIWEGYERSKMPLIKRSLVTVGVM--------LSSFFVPGNNKVTK 304
Query: 547 I 547
+
Sbjct: 305 L 305
Score = 163 bits (412), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 120/270 (44%), Positives = 158/270 (58%), Gaps = 35/270 (12%)
Query: 17 LQDLEEEFNQQIARILSCYQ--LPDHIRLDLHEQHRNDYKVPDDLRLKFVNAVFEGKSGM 74
LQDLE F QQ A IL CY LP+HIRLDL EQH ND+KVPDDL L+F+NA F+G
Sbjct: 14 LQDLETRFIQQTATILGCYDHLLPEHIRLDLQEQHCNDHKVPDDLWLEFINAAFDGNPET 73
Query: 75 LDQD---EELRVQARKESEKFWVEXXXXXXXXXXLQDMEERNRQLFFKHYPG-------- 123
LD++ ++L V ARKE++KFW+E L++MEER RQ F K PG
Sbjct: 74 LDREGGEQQLEVHARKEADKFWIEAAGAAKKAQALKEMEERFRQEFIK--PGLDKILLEL 131
Query: 124 VQDMPDHIREYCFR-------KFMEDARDEVEVRFGIRNHEMRLRIRAWEESQQFLIKTM 176
V+ +P++IRE FR + E + VE FG+ +HE RL+IRAWEESQ+F I
Sbjct: 132 VESLPENIREDFFRVRYEIVDEVQEILNERVEQNFGVGDHEKRLKIRAWEESQRFRIDAA 191
Query: 177 ADGRAAKKVQTLQDEEK--------RYVQGVKKTFDSENISEYFQQAFLQQGLLDNIRLL 228
AD RAAKK+Q LQD +K R+++G K I E+ + + + +++L
Sbjct: 192 ADKRAAKKLQPLQDMKKGFILDRLDRFLRGSPKYVKQHLIREHTEYS-----VPADMQLR 246
Query: 229 FIDDIEEKFNMPDDEEEPKGYISEDYNRLK 258
FIDDIE +F D +E K I E Y R K
Sbjct: 247 FIDDIERRFRKVDYQEVIKARIWEGYERSK 276
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.137 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 18,288,109
Number of extensions: 741719
Number of successful extensions: 1884
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1802
Number of HSP's successfully gapped: 6
Length of query: 586
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 480
Effective length of database: 11,501,117
Effective search space: 5520536160
Effective search space used: 5520536160
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 159 (65.9 bits)