Os09g0537200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os09g0537200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 164.39 | 0.602 | 6.71 | -1.48 | 3.15 | 3.26 | -0.117 | 2.71 | -0.214 | 15 | 10.05 | 286 | 11.5 | 15.4 |
| 174.17 | 0.615 | 6.7 | -1.75 | 3.15 | 4.06 | -0.484 | -- | -0.287 | 14.1 | 8.42 | 307 | 11.4 | 14.9 |
| 164.34 | 0.597 | 6.71 | -1.45 | 3.19 | 3.28 | -- | 2.75 | -0.212 | 15 | 9.582 | 290 | 11.5 | 15.4 |
| 174.9 | 0.616 | 6.7 | -1.73 | 3.28 | 4.01 | -- | -- | -0.269 | 14.1 | 6.444 | 309 | 11.5 | 14.9 |
| 326.57 | 0.842 | 6.67 | -1.59 | -- | 4.89 | -- | 5.52 | 0.0413 | -- | 11.12 | 235 | 10.6 | 11.8 |
| 280.33 | 0.785 | 6.75 | -1.34 | 4.09 | -- | 1.25 | -- | -0.0315 | 17.4 | -- | -- | -- | -- |
| 284.12 | 0.789 | 6.75 | -1.34 | 4.1 | -- | -- | -- | -0.0256 | 17.4 | -- | -- | -- | -- |
| 226.23 | 0.701 | 6.66 | -1.63 | -- | 4.95 | -- | -- | -0.134 | -- | 3.336 | 506 | 7.78 | 10.3 |
| 250.28 | 0.737 | 6.67 | -- | 3.41 | 3.27 | -- | -- | -0.044 | 14.7 | 3.378 | 292 | 11.7 | 14.9 |
| 1159.52 | 1.59 | 6.69 | -1.48 | -- | -- | -- | -- | -0.127 | -- | -- | -- | -- | -- |
| 331.44 | 0.852 | 6.71 | -- | 4.12 | -- | -- | -- | 0.124 | 17.4 | -- | -- | -- | -- |
| 296.33 | 0.802 | 6.69 | -- | -- | 4.73 | -- | -- | -0.0363 | -- | -3.212 | 469 | 8.2 | 10.2 |
| 1217.15 | 1.63 | 6.66 | -- | -- | -- | -- | -- | 0.0374 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 166.39 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 12 | 15 |
| 54 | 186.95 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 14 | 16 |
| 103 | 193.63 | temperature | 30.0 | 270 | < th | dose independent | rect. | 16 | 7 |
| 115 | 194.64 | radiation | 10.0 | 270 | < th | dose dependent | sin | 19 | NA |
| 132 | 196.12 | temperature | 30.0 | 270 | < th | dose independent | rect. | 16 | 19 |
| 148 | 197.14 | radiation | 20.0 | 270 | < th | dose dependent | rect. | 15 | 8 |
| 152 | 197.68 | temperature | 30.0 | 270 | < th | dose independent | rect. | 17 | 17 |
| 161 | 198.23 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 16 | 6 |
| 168 | 198.72 | radiation | 1.0 | 270 | > th | dose independent | sin | 20 | NA |
| 171 | 198.93 | temperature | 15.0 | 90 | > th | dose dependent | sin | 16 | NA |
| 200 | 200.32 | humidity | 60.0 | 270 | > th | dose independent | rect. | 16 | 7 |
| 213 | 200.79 | radiation | 1.0 | 270 | > th | dose independent | rect. | 11 | 8 |
| 229 | 200.94 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 11 | 6 |
| 253 | 201.21 | temperature | 15.0 | 270 | > th | dose dependent | sin | 18 | NA |
| 262 | 201.44 | radiation | 1.0 | 270 | < th | dose independent | rect. | 15 | 7 |
| 264 | 201.46 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 17 | 4 |
| 277 | 201.92 | radiation | 1.0 | 90 | < th | dose independent | sin | 16 | NA |
| 291 | 202.10 | radiation | 1.0 | 270 | < th | dose independent | sin | 20 | NA |
| 376 | 204.18 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 21 | 9 |
| 398 | 204.80 | temperature | 30.0 | 270 | < th | dose independent | rect. | 6 | 15 |
| 417 | 205.18 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 16 | 6 |
| 456 | 206.30 | radiation | 1.0 | 90 | > th | dose independent | sin | 17 | NA |
| 492 | 207.05 | humidity | 60.0 | 270 | > th | dose independent | rect. | 17 | 17 |
| 496 | 207.14 | temperature | 20.0 | 270 | > th | dose independent | rect. | 12 | 16 |
| 525 | 207.68 | humidity | 50.0 | 270 | > th | dose independent | rect. | 16 | 19 |
| 537 | 207.88 | temperature | 15.0 | 270 | > th | dose independent | rect. | 3 | 9 |
| 652 | 209.25 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 12 | 15 |
| 657 | 209.25 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 12 | 15 |
| 742 | 210.47 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 9 |
| 743 | 210.47 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 9 |
| 757 | 210.69 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 19 | 1 |
| 764 | 210.76 | temperature | 20.0 | 270 | > th | dose independent | rect. | 6 | 5 |
| 794 | 211.07 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 17 | 7 |
| 802 | 211.17 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 6 | 18 |
| 805 | 211.22 | wind | 9.0 | 270 | < th | dose independent | rect. | 12 | 15 |
| 811 | 211.27 | humidity | 90.0 | 10 | < th | dose independent | rect. | 3 | 11 |
| 842 | 211.53 | temperature | 30.0 | 720 | < th | dose independent | rect. | 16 | 13 |
| 843 | 211.53 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 17 | 18 |
| 872 | 211.77 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 17 | 5 |
| 876 | 211.82 | humidity | 90.0 | 270 | < th | dose independent | rect. | 11 | 6 |
| 907 | 212.03 | wind | 9.0 | 270 | < th | dose independent | rect. | 3 | 9 |
| 911 | 212.07 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 3 | 9 |
| 912 | 212.07 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 3 | 9 |
| 914 | 212.07 | temperature | 10.0 | 270 | > th | dose independent | rect. | 12 | 15 |
| 916 | 212.08 | radiation | 1.0 | 90 | < th | dose independent | rect. | 8 | 16 |
| 983 | 212.56 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 11 | 6 |
| 984 | 212.56 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 11 | 6 |
| 987 | 212.58 | wind | 9.0 | 270 | < th | dose independent | rect. | 11 | 6 |