BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0535900 Os09g0535900|AK061726
         (337 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os09g0535900  Similar to Ki1 protein                              642   0.0  

>Os09g0535900 Similar to Ki1 protein
          Length = 337

 Score =  642 bits (1657), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 314/322 (97%), Positives = 314/322 (97%)

Query: 16  PLEAMGAFFSSQVNRRKLVTSEKQALATRLSAGGEAFPGSEHRPADRKTWMAELGPERLR 75
           PLEAMGAFFSSQVNRRKLVTSEKQALATRLSAGGEAFPGSEHRPADRKTWMAELGPERLR
Sbjct: 16  PLEAMGAFFSSQVNRRKLVTSEKQALATRLSAGGEAFPGSEHRPADRKTWMAELGPERLR 75

Query: 76  VHQLVWPGTHDSATNKIGIPFVTRPFAQCQSLSVYEQLAAGARVIDVRVQEERRVCHGVL 135
           VHQLVWPGTHDSATNKIGIPFVTRPFAQCQSLSVYEQLAAGARVIDVRVQEERRVCHGVL
Sbjct: 76  VHQLVWPGTHDSATNKIGIPFVTRPFAQCQSLSVYEQLAAGARVIDVRVQEERRVCHGVL 135

Query: 136 ATYSXXXXXXXXRRFLGETASEVVILEVRTEFGHDDPPEFGRYLVEQLGEHLIPQDEAVF 195
           ATYS        RRFLGETASEVVILEVRTEFGHDDPPEFGRYLVEQLGEHLIPQDEAVF
Sbjct: 136 ATYSVDVVLDDVRRFLGETASEVVILEVRTEFGHDDPPEFGRYLVEQLGEHLIPQDEAVF 195

Query: 196 HKTIAELLPRRLICVWKPRKSPAPKPGEPLWSAGYLRDNWIDTDLPETKFESNVKFLGEQ 255
           HKTIAELLPRRLICVWKPRKSPAPKPGEPLWSAGYLRDNWIDTDLPETKFESNVKFLGEQ
Sbjct: 196 HKTIAELLPRRLICVWKPRKSPAPKPGEPLWSAGYLRDNWIDTDLPETKFESNVKFLGEQ 255

Query: 256 PPVADRRFFYRVENTVTPQADNPVLCVRPVTRRIHGYARLFIAEVFAKGLGDKLQVFSTD 315
           PPVADRRFFYRVENTVTPQADNPVLCVRPVTRRIHGYARLFIAEVFAKGLGDKLQVFSTD
Sbjct: 256 PPVADRRFFYRVENTVTPQADNPVLCVRPVTRRIHGYARLFIAEVFAKGLGDKLQVFSTD 315

Query: 316 FIDGDFVDACAGVTKARVDGAA 337
           FIDGDFVDACAGVTKARVDGAA
Sbjct: 316 FIDGDFVDACAGVTKARVDGAA 337



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.321    0.138    0.424 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,677,227
Number of extensions: 513027
Number of successful extensions: 945
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 945
Number of HSP's successfully gapped: 1
Length of query: 337
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 236
Effective length of database: 11,762,187
Effective search space: 2775876132
Effective search space used: 2775876132
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 156 (64.7 bits)