BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0530700 Os09g0530700|AK058211
         (205 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os09g0530700  Conserved hypothetical protein                      391   e-109
Os06g0713900  Conserved hypothetical protein                       89   2e-18

>Os09g0530700 Conserved hypothetical protein
          Length = 205

 Score =  391 bits (1004), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 193/205 (94%), Positives = 193/205 (94%)

Query: 1   MGEESPXXXXXXXXXXXXKPSGTALPRRGKSCKGCLYYSSMLRSRGFNPVCVGIPRSIPQ 60
           MGEESP            KPSGTALPRRGKSCKGCLYYSSMLRSRGFNPVCVGIPRSIPQ
Sbjct: 1   MGEESPAAGGGAAAAAAGKPSGTALPRRGKSCKGCLYYSSMLRSRGFNPVCVGIPRSIPQ 60

Query: 61  VPSYVVDEPREEAAAQGHDLRQFKYACAGYSMFVVDNKDGRSGEKEGKTLLPYCQGLELL 120
           VPSYVVDEPREEAAAQGHDLRQFKYACAGYSMFVVDNKDGRSGEKEGKTLLPYCQGLELL
Sbjct: 61  VPSYVVDEPREEAAAQGHDLRQFKYACAGYSMFVVDNKDGRSGEKEGKTLLPYCQGLELL 120

Query: 121 VDSRLVEKKSPNNEPATASYRKEAATSSRQQGQRPGQLTGQDFYARFRKSAGLVASGVAK 180
           VDSRLVEKKSPNNEPATASYRKEAATSSRQQGQRPGQLTGQDFYARFRKSAGLVASGVAK
Sbjct: 121 VDSRLVEKKSPNNEPATASYRKEAATSSRQQGQRPGQLTGQDFYARFRKSAGLVASGVAK 180

Query: 181 NLNKTAIYIKENVADILYPDRRPPK 205
           NLNKTAIYIKENVADILYPDRRPPK
Sbjct: 181 NLNKTAIYIKENVADILYPDRRPPK 205



>Os06g0713900 Conserved hypothetical protein
          Length = 129

 Score = 89.4 bits (220), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 44/90 (48%), Positives = 58/90 (64%), Gaps = 1/90 (1%)

Query: 31  SCKGCLYYSSMLRSRGFNPVCVGIPRSIPQVPSYVVDEPREEAAAQGHDLRQFKYACAGY 90
           SCKG L+YSS LRSR   PVC GI R+IPQVP ++V E   EA  +G +L  F+Y C GY
Sbjct: 39  SCKGYLFYSSSLRSRDRGPVCAGITRAIPQVPDHMVGEIEMEAIQEGRNLSDFRYGCIGY 98

Query: 91  SMFVVDNKDGRSGEKEGKTLLPYCQGLELL 120
           SM+ +D+K    G+ +    LP C G+E+ 
Sbjct: 99  SMY-LDDKKSSEGKGDKHPQLPICVGIEVF 127



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.314    0.133    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,944,529
Number of extensions: 280311
Number of successful extensions: 503
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 502
Number of HSP's successfully gapped: 2
Length of query: 205
Length of database: 17,035,801
Length adjustment: 96
Effective length of query: 109
Effective length of database: 12,023,257
Effective search space: 1310535013
Effective search space used: 1310535013
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 153 (63.5 bits)