Os09g0530700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os09g0530700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 14.5 | 0.179 | 11.9 | -0.438 | 0.287 | -0.769 | -0.135 | 0.762 | 0.0259 | 22.5 | 24.97 | 15 | -- | -- |
| 14.7 | 0.179 | 11.9 | -0.508 | 0.292 | -0.692 | -0.212 | -- | 0.0418 | 22.6 | 23.23 | 23 | -- | -- |
| 14.55 | 0.178 | 11.9 | -0.426 | 0.29 | -0.783 | -- | 0.855 | 0.0318 | 22.4 | 24.94 | 18 | -- | -- |
| 14.84 | 0.179 | 11.9 | -0.504 | 0.293 | -0.692 | -- | -- | 0.0423 | 22.6 | 23.2 | 19 | -- | -- |
| 19 | 0.204 | 11.9 | -0.374 | -- | -0.905 | -- | 1.02 | 0.0649 | -- | 24.43 | 11 | -- | -- |
| 22.31 | 0.221 | 11.9 | -0.634 | 0.477 | -- | -0.102 | -- | -0.059 | 0.667 | -- | -- | -- | -- |
| 22.36 | 0.221 | 11.9 | -0.63 | 0.478 | -- | -- | -- | -0.0585 | 0.673 | -- | -- | -- | -- |
| 19.25 | 0.204 | 11.9 | -0.469 | -- | -0.839 | -- | -- | 0.0664 | -- | 23 | 9 | -- | -- |
| 20.98 | 0.213 | 11.9 | -- | 0.263 | -0.842 | -- | -- | 0.124 | 21.8 | 22.8 | 18 | -- | -- |
| 36.64 | 0.283 | 11.9 | -0.613 | -- | -- | -- | -- | -0.0501 | -- | -- | -- | -- | -- |
| 32.84 | 0.268 | 11.9 | -- | 0.468 | -- | -- | -- | 0.0117 | 0.609 | -- | -- | -- | -- |
| 24.6 | 0.231 | 11.9 | -- | -- | -0.938 | -- | -- | 0.147 | -- | 21.38 | 10 | -- | -- |
| 46.57 | 0.319 | 11.9 | -- | -- | -- | -- | -- | 0.018 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 14.08 | temperature | 20 | 270 | > th | dose dependent | sin | 2 | NA |
| 2 | 14.09 | temperature | 10 | 270 | > th | dose dependent | sin | 2 | NA |
| 4 | 14.14 | temperature | 25 | 10 | > th | dose dependent | rect. | 3 | 17 |
| 16 | 14.20 | temperature | 25 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 22 | 14.24 | temperature | 25 | 10 | > th | dose dependent | rect. | 23 | 21 |
| 37 | 14.39 | temperature | 25 | 10 | > th | dose dependent | rect. | 3 | 21 |
| 58 | 14.42 | temperature | 20 | 270 | > th | dose dependent | rect. | 4 | 13 |
| 106 | 14.55 | temperature | 25 | 10 | > th | dose dependent | no | NA | NA |
| 134 | 14.57 | temperature | 25 | 10 | > th | dose dependent | rect. | 6 | 23 |
| 231 | 14.69 | temperature | 20 | 720 | > th | dose dependent | sin | 6 | NA |
| 285 | 14.77 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 16 |
| 317 | 14.87 | temperature | 20 | 720 | > th | dose dependent | rect. | 3 | 6 |
| 342 | 14.93 | temperature | 20 | 720 | > th | dose dependent | rect. | 1 | 10 |
| 357 | 14.97 | temperature | 30 | 270 | < th | dose dependent | sin | 1 | NA |
| 390 | 15.03 | temperature | 25 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 398 | 15.06 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 12 |
| 411 | 15.09 | temperature | 30 | 90 | < th | dose dependent | sin | 23 | NA |
| 450 | 15.17 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 8 |
| 480 | 15.22 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 14 |
| 561 | 15.32 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 21 |
| 571 | 15.34 | temperature | 30 | 720 | < th | dose dependent | rect. | 2 | 10 |
| 593 | 15.36 | temperature | 30 | 720 | < th | dose dependent | sin | 5 | NA |
| 649 | 15.42 | temperature | 25 | 90 | > th | dose dependent | rect. | 15 | 23 |
| 664 | 15.44 | temperature | 30 | 270 | < th | dose dependent | rect. | 3 | 16 |
| 699 | 15.47 | temperature | 25 | 90 | > th | dose dependent | rect. | 13 | 23 |
| 724 | 15.49 | temperature | 25 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 747 | 15.52 | temperature | 30 | 270 | < th | dose dependent | rect. | 5 | 14 |
| 770 | 15.53 | temperature | 25 | 10 | > th | dose dependent | rect. | 13 | 23 |