BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0526000 Os09g0526000|Os09g0526000
         (158 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os09g0526000  Conserved hypothetical protein                      181   2e-46
Os01g0617600  Protein of unknown function DUF860, plant fami...    64   5e-11

>Os09g0526000 Conserved hypothetical protein
          Length = 158

 Score =  181 bits (459), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 102/158 (64%), Positives = 102/158 (64%)

Query: 1   MSVPFSRLGASSASRPSTPAVXXXXXXXXXXXXXXXXXXXXAATALRLEADTIASSLPAS 60
           MSVPFSRLGASSASRPSTPAV                    AATALRLEADTIASSLPAS
Sbjct: 1   MSVPFSRLGASSASRPSTPAVSSCATRTRSTASSTPRLTPRAATALRLEADTIASSLPAS 60

Query: 61  IIRIRKLLLLAPPPAHNXXXXXXXXXXXXGETRKANLDRMFTSTXXXXXXXXXXXXXXXX 120
           IIRIRKLLLLAPPPAHN            GETRKANLDRMFTST                
Sbjct: 61  IIRIRKLLLLAPPPAHNRLRLRLEHILLLGETRKANLDRMFTSTGRGWDELGGGRRGGAE 120

Query: 121 XXXXXXXXASDRRANIKADGDYGGDCGHDSGVESLYIE 158
                   ASDRRANIKADGDYGGDCGHDSGVESLYIE
Sbjct: 121 LREEFLGEASDRRANIKADGDYGGDCGHDSGVESLYIE 158



>Os01g0617600 Protein of unknown function DUF860, plant family protein
          Length = 466

 Score = 63.5 bits (153), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 34/66 (51%), Positives = 36/66 (54%)

Query: 93  RKANLDRMFTSTXXXXXXXXXXXXXXXXXXXXXXXXASDRRANIKADGDYGGDCGHDSGV 152
           +KANLDRMFTS                         ASDRR N K DG+YGGD G DSGV
Sbjct: 401 QKANLDRMFTSMGRGWDELGGGRRGGAELREEFLGEASDRRTNTKVDGEYGGDSGDDSGV 460

Query: 153 ESLYIE 158
           ESLYIE
Sbjct: 461 ESLYIE 466



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.314    0.129    0.361 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,571,747
Number of extensions: 76885
Number of successful extensions: 191
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 188
Number of HSP's successfully gapped: 2
Length of query: 158
Length of database: 17,035,801
Length adjustment: 93
Effective length of query: 65
Effective length of database: 12,179,899
Effective search space: 791693435
Effective search space used: 791693435
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 152 (63.2 bits)