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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0526000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.81 (0.0329) R2 : 0.736
β1 : 2.17 (0.123) R2dD : 0.2 R2D : 0.131
β2 : 2.6 (0.0846) R2dC : 0.555 R2C : 0.532
β3 : 1.45 (0.16) R2dE : 0.0522 R2E : 0.00751
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.317 (0.0715) R2dN8 : 0.0156 R2N8 : -0.0197
σ : 0.613
deviance : 173.43
__
_____
C
peak time of C : 16.6
E
wheather : humidity
threshold : 85.58
memory length : 1404
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 12.1
open length of G : 1.42

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
160.81 0.596 5.81 2.08 2.61 0.893 1.9 -1.84 0.325 16.6 83.19 1363 12 3.43
163.6 0.596 5.81 2.13 2.59 1.36 1.96 -- 0.316 16.6 85.83 1404 12 1.51
170.32 0.608 5.8 2.1 2.63 0.9 -- -1.95 0.333 16.6 83.45 1354 12 3.5
173.43 0.613 5.81 2.17 2.6 1.45 -- -- 0.317 16.6 85.58 1404 12.1 1.42
529.8 1.07 5.76 2.01 -- 1.07 -- -0.829 0.315 -- 82 1846 11.6 3.24
194.63 0.654 5.84 1.94 2.6 -- 2.04 -- 0.186 16.7 -- -- -- --
205.51 0.671 5.83 1.95 2.61 -- -- -- 0.196 16.7 -- -- -- --
236.79 0.717 5.75 2.05 -- 1.96 -- -- 0.37 -- 38.06 820 8.12 3.5
273.15 0.77 5.86 -- 2.58 1.04 -- -- 0.118 16.7 83.37 2365 14 1.55
566.96 1.11 5.81 1.85 -- -- -- -- 0.128 -- -- -- -- --
305.88 0.818 5.88 -- 2.58 -- -- -- -0.0209 16.8 -- -- -- --
314.07 0.825 5.88 -- -- 2.26 -- -- -0.0411 -- 9.618 783 7.63 5.77
657.51 1.2 5.86 -- -- -- -- -- -0.0772 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 165.53 radiation 10.0 1440 < th dose dependent rect. 12 3
3 166.01 humidity 80.0 1440 > th dose dependent rect. 12 2
4 166.02 humidity 80.0 1440 > th dose independent rect. 12 2
7 166.26 humidity 70.0 270 > th dose dependent rect. 20 6
8 166.36 radiation 1.0 1440 < th dose independent rect. 12 1
18 167.18 humidity 80.0 270 > th dose dependent rect. 22 3
19 167.29 radiation 1.0 1440 > th dose independent rect. 12 1
28 167.66 humidity 80.0 1440 < th dose independent rect. 12 2
52 168.53 radiation 40.0 270 < th dose dependent rect. 2 9
122 170.47 radiation 30.0 270 < th dose independent rect. 2 8
125 170.56 atmosphere 1000.0 270 > th dose independent rect. 21 5
168 171.58 temperature 10.0 90 > th dose dependent rect. 8 9
171 171.66 radiation 40.0 270 < th dose independent rect. 2 19
175 171.74 radiation 40.0 90 < th dose dependent rect. 4 19
189 171.96 atmosphere 1000.0 90 > th dose independent rect. 23 5
195 172.05 humidity 90.0 270 > th dose independent rect. 22 3
199 172.07 atmosphere 1000.0 270 > th dose independent rect. 20 7
203 172.14 atmosphere 1000.0 270 > th dose independent rect. 22 3
205 172.17 radiation 1.0 10 < th dose independent rect. 23 18
216 172.30 humidity 50.0 270 > th dose dependent rect. 2 9
225 172.50 radiation 1.0 30 < th dose dependent rect. 23 18
230 172.57 radiation 40.0 90 < th dose independent rect. 4 19
232 172.59 radiation 40.0 270 < th dose dependent rect. 2 18
249 172.73 humidity 90.0 270 > th dose independent rect. 23 1
250 172.76 radiation 10.0 1440 < th dose dependent rect. 11 16
266 172.89 radiation 1.0 10 < th dose independent rect. 23 8
303 173.19 radiation 1.0 30 < th dose dependent rect. 23 7
308 173.24 radiation 30.0 90 < th dose independent rect. 4 7
315 173.28 humidity 60.0 90 > th dose dependent rect. 4 16
319 173.31 radiation 20.0 90 < th dose independent rect. 4 19
341 173.43 humidity 60.0 14400 > th dose independent rect. 5 3
363 173.59 temperature 25.0 270 < th dose independent rect. 2 7
370 173.62 humidity 50.0 30 > th dose dependent rect. 4 19
384 173.70 humidity 80.0 270 > th dose independent rect. 2 8
389 173.74 wind 7.0 270 < th dose independent rect. 21 5
390 173.74 atmosphere 1015.0 270 < th dose independent rect. 2 19
396 173.76 temperature 30.0 270 < th dose dependent rect. 23 2
400 173.82 temperature 30.0 10 < th dose independent rect. 4 19
408 173.86 precipitation 0.1 270 > th dose dependent rect. 2 2
422 173.93 humidity 70.0 30 > th dose independent rect. 4 19
426 173.96 precipitation 0.1 270 > th dose independent rect. 2 2
432 173.99 temperature 10.0 10 > th dose dependent rect. 8 10
435 174.00 temperature 15.0 270 > th dose independent rect. 16 15
442 174.04 temperature 10.0 270 > th dose independent rect. 21 5
443 174.04 temperature 30.0 270 < th dose independent rect. 21 5
444 174.04 humidity 50.0 270 > th dose independent rect. 21 5
448 174.04 radiation 1.0 270 < th dose independent rect. 21 5
453 174.04 temperature 10.0 270 > th dose independent rect. 2 19
454 174.04 radiation 1.0 270 < th dose dependent rect. 21 5
479 174.13 precipitation 0.1 270 < th dose independent rect. 2 19
481 174.13 precipitation 0.1 270 < th dose dependent rect. 2 19
500 174.23 precipitation 0.1 270 < th dose independent rect. 21 5
501 174.23 precipitation 0.1 270 < th dose dependent rect. 21 5
512 174.30 wind 7.0 270 < th dose independent rect. 20 7
514 174.31 radiation 40.0 270 < th dose dependent rect. 16 15
530 174.42 humidity 50.0 270 > th dose dependent rect. 2 17
536 174.46 humidity 80.0 90 > th dose independent rect. 4 7
539 174.47 temperature 10.0 270 > th dose independent rect. 20 7
540 174.47 temperature 30.0 270 < th dose independent rect. 20 7
541 174.47 humidity 50.0 270 > th dose independent rect. 20 7
545 174.47 radiation 1.0 270 < th dose independent rect. 20 7
552 174.47 temperature 10.0 270 > th dose independent rect. 3 17
553 174.47 atmosphere 1015.0 270 < th dose independent rect. 3 17
554 174.47 radiation 1.0 270 < th dose dependent rect. 20 7
563 174.51 humidity 60.0 90 > th dose dependent rect. 4 8
565 174.53 precipitation 0.1 270 < th dose independent rect. 3 17
568 174.53 precipitation 0.1 270 < th dose dependent rect. 3 17
591 174.64 humidity 70.0 30 > th dose independent rect. 4 16
592 174.64 temperature 30.0 90 < th dose dependent rect. 23 5
619 174.73 atmosphere 1005.0 10 < th dose dependent rect. 24 7
632 174.78 precipitation 0.1 270 < th dose independent rect. 20 7
635 174.78 precipitation 0.1 270 < th dose dependent rect. 20 7
648 174.84 radiation 1.0 10 > th dose independent rect. 5 3
726 175.09 radiation 1.0 10 < th dose independent sin 8 NA
731 175.10 radiation 1.0 30 < th dose dependent sin 8 NA
739 175.12 wind 9.0 270 < th dose dependent rect. 21 5
744 175.15 radiation 1.0 10 > th dose independent sin 8 NA
746 175.15 wind 9.0 270 < th dose dependent rect. 22 3
751 175.16 temperature 10.0 30 > th dose dependent rect. 8 20
759 175.18 precipitation 0.1 270 < th dose independent rect. 2 6
760 175.18 precipitation 0.1 270 < th dose dependent rect. 2 6
762 175.19 atmosphere 995.0 270 > th dose independent rect. 2 19
766 175.21 wind 7.0 270 < th dose independent rect. 7 9
819 175.27 wind 9.0 270 < th dose independent rect. 2 19
823 175.28 wind 7.0 270 < th dose independent rect. 8 18
849 175.35 radiation 20.0 270 < th dose independent rect. 16 15
852 175.37 atmosphere 1005.0 270 < th dose dependent rect. 1 1
865 175.40 humidity 80.0 90 > th dose independent rect. 4 9
873 175.42 radiation 1.0 10 < th dose independent rect. 20 21
904 175.44 humidity 90.0 720 > th dose dependent rect. 12 13
906 175.44 radiation 1.0 30 < th dose dependent rect. 20 21
914 175.47 wind 5.0 270 < th dose independent rect. 2 6
922 175.49 atmosphere 995.0 270 > th dose independent rect. 3 17
934 175.52 atmosphere 1005.0 90 < th dose dependent rect. 24 7
943 175.56 wind 9.0 90 < th dose independent rect. 23 5
944 175.56 temperature 10.0 90 > th dose independent rect. 23 5
945 175.56 temperature 30.0 90 < th dose independent rect. 23 5
946 175.56 humidity 50.0 90 > th dose independent rect. 23 5
951 175.56 radiation 1.0 90 < th dose independent rect. 23 5
959 175.56 radiation 1.0 90 < th dose dependent rect. 23 5
998 175.64 wind 7.0 270 < th dose independent rect. 22 3