BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0520800 Os09g0520800|AK109462
         (494 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os09g0520800  Glycoside hydrolase, family 29 (alpha-L-fucosi...   777   0.0  
AK067427                                                          200   3e-51

>Os09g0520800 Glycoside hydrolase, family 29 (alpha-L-fucosidase) protein
          Length = 494

 Score =  777 bits (2007), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 384/448 (85%), Positives = 384/448 (85%)

Query: 47  QLRWQRREVIMFFHFGMNTFTDSEWGTGREPPAAFRPXXXXXXXXXXXXXXXXXXXXXXX 106
           QLRWQRREVIMFFHFGMNTFTDSEWGTGREPPAAFRP                       
Sbjct: 47  QLRWQRREVIMFFHFGMNTFTDSEWGTGREPPAAFRPAALDASQWMDAAAAAGASLVVLV 106

Query: 107 XKHHDGFCLWPSAHTAHSVRASPWRGGRGDVVREFADAARARGLDIGIYLSPWDRHDKRY 166
            KHHDGFCLWPSAHTAHSVRASPWRGGRGDVVREFADAARARGLDIGIYLSPWDRHDKRY
Sbjct: 107 AKHHDGFCLWPSAHTAHSVRASPWRGGRGDVVREFADAARARGLDIGIYLSPWDRHDKRY 166

Query: 167 GREVAYNEYYLAQLHELLTGYGSVSEIWFDGAKGKNATNMTYHFQEWFQTVRQLQSSINI 226
           GREVAYNEYYLAQLHELLTGYGSVSEIWFDGAKGKNATNMTYHFQEWFQTVRQLQSSINI
Sbjct: 167 GREVAYNEYYLAQLHELLTGYGSVSEIWFDGAKGKNATNMTYHFQEWFQTVRQLQSSINI 226

Query: 227 FSDDGPDLRWVGDENGSAGSTCWSTINRSKITIGEAGIEKYLNTGDPRGKDWVPPECDVS 286
           FSDDGPDLRWVGDENGSAGSTCWSTINRSKITIGEAGIEKYLNTGDPRGKDWVPPECDVS
Sbjct: 227 FSDDGPDLRWVGDENGSAGSTCWSTINRSKITIGEAGIEKYLNTGDPRGKDWVPPECDVS 286

Query: 287 IRPGWFWHKNETAKPLPELLEVYYNSVGRNCVLLLNAPPNTTGLVDAADIARLREFRTAV 346
           IRPGWFWHKNETAKPLPELLEVYYNSVGRNCVLLLNAPPNTTGLVDAADIARLREFRTAV
Sbjct: 287 IRPGWFWHKNETAKPLPELLEVYYNSVGRNCVLLLNAPPNTTGLVDAADIARLREFRTAV 346

Query: 347 TAIFGTDLXXXXXXXXXXXXXXXXXXXNVLDGRDDTYWXXXXXXXXDGGGYWIELRRPAS 406
           TAIFGTDL                   NVLDGRDDTYW        DGGGYWIELRRPAS
Sbjct: 347 TAIFGTDLAAGSAARASSERGGRFAAANVLDGRDDTYWAPAAAEAEDGGGYWIELRRPAS 406

Query: 407 AAARKFNVVRIQEHVAMGQRVERHEVYVDXXXXXXXXXXXXXHKRLHRLGAPVAGRTVRV 466
           AAARKFNVVRIQEHVAMGQRVERHEVYVD             HKRLHRLGAPVAGRTVRV
Sbjct: 407 AAARKFNVVRIQEHVAMGQRVERHEVYVDGGGAAVASGTTVGHKRLHRLGAPVAGRTVRV 466

Query: 467 WLASRRGPPLLSAVGLHLDPFAAGGGTM 494
           WLASRRGPPLLSAVGLHLDPFAAGGGTM
Sbjct: 467 WLASRRGPPLLSAVGLHLDPFAAGGGTM 494



>AK067427 
          Length = 1315

 Score =  200 bits (508), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 113/284 (39%), Positives = 150/284 (52%), Gaps = 15/284 (5%)

Query: 212  EWFQTVRQLQSSINIFSDDGPDLRWVGDENGSAGSTCWSTINRSKITIGEAGIEKYLNTG 271
            E +  + QLQ  + IFSD GPD RWVGDE G AG TCWS  N+S +TIG   I +Y   G
Sbjct: 1006 EQYALIHQLQQRVVIFSDAGPDTRWVGDEAGVAGYTCWSPFNKSTVTIGHI-IPEYSRCG 1064

Query: 272  DPRGKDWVPPECDVSIRPGWFWHKNETAKPLPELLEVYYNSVGRNCVLLLNAPPNTTGLV 331
            DP G+DWVP ECDVSIRPGWFWH +E  K    LL++YY SVGRNC+L+LN PPN++GL+
Sbjct: 1065 DPFGQDWVPAECDVSIRPGWFWHASEKPKNATTLLDIYYKSVGRNCLLILNVPPNSSGLI 1124

Query: 332  DAADIARLREFRTAVTAIFGTDLXXXXXXXXXXXX----XXXXXXXNVLDGRDDTYWXXX 387
               D+  L+EF      IF  +                        NVL     +YW   
Sbjct: 1125 STEDMQVLQEFTEIRQTIFSQNFAANATVTASTVRGGLGNQQFAPSNVLQESIYSYW--- 1181

Query: 388  XXXXXDGGGYWIELRRPASAAARKFNVVRIQEHVAMGQRVE--RHEVYVDXXXXXXXXXX 445
                 +G   W  L     +A+  FNV+++QE + MGQRV   R E+ VD          
Sbjct: 1182 --APEEGQSSWEMLFDLGQSAS--FNVIQLQEPIQMGQRVIKFRVEILVDELWQTIVEGT 1237

Query: 446  XXXHKRLHRLGAPVAGRTVRVWLASRRGPPLLSAVGLHLDPFAA 489
               +KRL +    V G+ +++ +   R  PL+S  G+  D F+ 
Sbjct: 1238 TIGYKRLFQFPV-VEGQFLKLSIDGARADPLISFFGVFTDSFSV 1280



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.321    0.138    0.457 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 16,017,290
Number of extensions: 646941
Number of successful extensions: 1247
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1242
Number of HSP's successfully gapped: 2
Length of query: 494
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 389
Effective length of database: 11,553,331
Effective search space: 4494245759
Effective search space used: 4494245759
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 158 (65.5 bits)