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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0520800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Glycoside hydrolase, family 29 (alpha-L-fucosidase) protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.42 (0.0532) R2 : 0.0488
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.623 (0.129) R2dC : 0.0485 R2C : 0.0482
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0496 (0.112) R2dN8 : 0.000527 R2N8 : 0.000207
σ : 1
deviance : 461.23
__
_____
C
peak time of C : 13.8
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
421.64 0.965 3.58 -1.74 0.719 -0.434 -1.97 3.81 -0.466 13 24.6 856 -- --
439.7 0.984 3.45 -0.642 0.543 -0.577 -1.24 -- -0.0641 14.1 18.71 153 -- --
432.48 0.969 3.55 -1.56 0.657 -0.355 -- 2.54 -0.361 13.2 24 579 -- --
443.52 0.981 3.46 -0.77 0.551 -0.811 -- -- -0.0835 13.7 18.7 174 -- --
453.21 0.997 3.54 -1.23 -- -0.368 -- 1.59 -0.323 -- 23.6 440 -- --
447.24 0.991 3.43 -0.501 0.615 -- -1.28 -- -0.00288 13.9 -- -- -- --
453.53 0.997 3.44 -0.54 0.613 -- -- -- -0.0106 13.8 -- -- -- --
459.37 1 3.48 -0.728 -- -0.546 -- -- -0.158 -- 21.5 73 -- --
457.14 1 3.43 -- 0.579 -0.45 -- -- 0.0203 13.9 18.63 176 -- --
476.32 1.02 3.45 -0.565 -- -- -- -- -0.0245 -- -- -- -- --
461.23 1 3.42 -- 0.623 -- -- -- 0.0496 13.8 -- -- -- --
471.65 1.01 3.46 -- -- -0.493 -- -- -0.0565 -- 21.5 49 -- --
484.75 1.03 3.43 -- -- -- -- -- 0.0382 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 417.19 temperature 20.0 30 > th dose dependent rect. 17 19
5 418.91 temperature 25.0 270 > th dose independent rect. 16 17
7 419.41 temperature 20.0 14400 < th dose independent rect. 2 1
9 419.80 wind 5.0 43200 < th dose independent rect. 22 1
13 419.95 humidity 80.0 43200 > th dose independent rect. 19 3
15 420.07 wind 7.0 14400 < th dose independent rect. 11 1
18 420.12 wind 5.0 43200 > th dose independent rect. 22 1
19 420.18 precipitation 0.1 14400 > th dose independent rect. 5 3
21 420.22 wind 7.0 14400 > th dose independent rect. 11 1
22 420.25 humidity 80.0 43200 > th dose independent rect. 20 1
23 420.25 precipitation 0.1 14400 > th dose dependent rect. 5 3
24 420.26 precipitation 0.1 14400 < th dose independent rect. 5 3
25 420.26 precipitation 0.1 14400 < th dose dependent rect. 5 3
26 420.26 temperature 25.0 270 > th dose dependent rect. 17 16
29 420.34 humidity 80.0 43200 < th dose independent rect. 19 3
30 420.44 humidity 80.0 43200 < th dose independent rect. 20 1
34 420.60 precipitation 0.1 14400 > th dose independent rect. 3 5
39 420.79 wind 5.0 14400 > th dose dependent rect. 11 1
41 420.86 precipitation 0.1 14400 < th dose independent rect. 3 5
42 420.86 precipitation 0.1 14400 < th dose dependent rect. 3 5
44 420.88 radiation 20.0 43200 > th dose independent rect. 9 1
47 420.92 temperature 20.0 14400 > th dose independent rect. 2 2
67 421.18 precipitation 0.1 14400 > th dose dependent rect. 3 5
69 421.20 humidity 80.0 43200 < th dose independent rect. 18 5
70 421.22 radiation 20.0 43200 > th dose independent rect. 8 3
97 421.58 humidity 70.0 43200 > th dose independent rect. 17 2
112 421.75 humidity 70.0 43200 > th dose independent rect. 16 4
119 421.81 humidity 70.0 43200 < th dose independent rect. 13 8
128 421.86 humidity 70.0 43200 < th dose independent rect. 14 6
137 421.93 temperature 25.0 720 < th dose independent rect. 2 22
138 421.93 radiation 40.0 43200 < th dose dependent rect. 9 1
148 422.04 humidity 70.0 43200 < th dose independent rect. 17 2
150 422.04 temperature 25.0 4320 > th dose independent rect. 23 14
152 422.06 wind 5.0 43200 > th dose dependent rect. 22 1
153 422.08 humidity 70.0 43200 < th dose independent rect. 16 4
169 422.12 humidity 70.0 43200 < th dose independent rect. 5 13
174 422.15 humidity 70.0 43200 < th dose independent rect. 7 12
176 422.15 humidity 50.0 43200 > th dose dependent rect. 9 1
187 422.18 humidity 70.0 43200 > th dose independent rect. 9 1
234 422.31 humidity 70.0 43200 < th dose independent sin 22 NA
253 422.32 humidity 70.0 43200 < th dose independent rect. 9 1
272 422.37 radiation 10.0 43200 > th dose dependent rect. 9 1
273 422.37 temperature 20.0 30 > th dose dependent rect. 17 10
294 422.43 humidity 70.0 43200 > th dose independent rect. 7 13
312 422.45 temperature 25.0 4320 < th dose independent rect. 23 14
318 422.46 radiation 10.0 14400 > th dose independent rect. 17 14
322 422.47 humidity 50.0 43200 > th dose independent rect. 15 4
337 422.50 humidity 90.0 43200 < th dose dependent rect. 9 1
360 422.57 humidity 50.0 43200 < th dose independent rect. 17 2
404 422.64 humidity 50.0 43200 > th dose independent rect. 15 19
408 422.65 temperature 30.0 270 < th dose dependent rect. 11 20
412 422.67 radiation 20.0 43200 > th dose independent sin 8 NA
417 422.67 humidity 50.0 43200 < th dose independent rect. 16 19
425 422.69 humidity 70.0 43200 > th dose independent sin 22 NA
451 422.74 wind 1.0 14400 < th dose dependent rect. 24 1
452 422.74 temperature 15.0 14400 < th dose dependent rect. 4 1
465 422.78 humidity 70.0 43200 < th dose independent rect. 8 6
466 422.78 humidity 60.0 43200 > th dose independent rect. 2 14
471 422.80 humidity 50.0 43200 < th dose independent rect. 15 4
472 422.80 wind 9.0 14400 > th dose independent rect. 5 7
496 422.84 humidity 50.0 43200 > th dose independent sin 12 NA
500 422.84 humidity 50.0 43200 > th dose independent rect. 15 16
511 422.86 humidity 50.0 43200 > th dose independent rect. 15 11
554 422.92 humidity 50.0 43200 > th dose independent rect. 17 2
558 422.92 humidity 60.0 43200 < th dose independent rect. 12 19
561 422.93 atmosphere 1005.0 43200 < th dose independent rect. 10 1
569 422.94 humidity 60.0 43200 < th dose independent rect. 11 1
602 422.98 humidity 60.0 43200 < th dose independent rect. 12 21
605 422.99 humidity 60.0 43200 > th dose independent rect. 11 20
644 423.03 humidity 60.0 43200 > th dose independent rect. 12 17
649 423.03 atmosphere 1010.0 43200 < th dose dependent rect. 10 1
656 423.04 humidity 70.0 43200 > th dose independent rect. 7 7
665 423.04 humidity 80.0 43200 < th dose dependent rect. 17 2
667 423.05 humidity 60.0 43200 > th dose independent rect. 11 3
673 423.06 humidity 70.0 43200 > th dose independent rect. 8 5
679 423.06 radiation 10.0 4320 < th dose dependent rect. 4 1
689 423.07 wind 1.0 43200 < th dose dependent rect. 20 2
690 423.07 temperature 15.0 30 > th dose dependent rect. 20 16
739 423.11 radiation 20.0 14400 < th dose independent rect. 20 10
746 423.12 radiation 30.0 43200 > th dose independent rect. 12 1
754 423.12 humidity 50.0 43200 < th dose independent rect. 15 16
875 423.20 atmosphere 1005.0 43200 > th dose independent rect. 10 1
920 423.22 humidity 60.0 43200 > th dose independent rect. 8 23
988 423.27 humidity 60.0 43200 > th dose independent no NA NA
998 423.27 radiation 40.0 43200 < th dose dependent rect. 12 1