BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0518900 Os09g0518900|AK072714
         (344 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os09g0518900  Conserved hypothetical protein                      529   e-151

>Os09g0518900 Conserved hypothetical protein
          Length = 344

 Score =  529 bits (1363), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 274/326 (84%), Positives = 274/326 (84%)

Query: 19  LRPHLTRLTVFLIVFSAGYSVGIMSSSIRPPASKPSQTVIRPRAAHLSGTASSTDVPXXX 78
           LRPHLTRLTVFLIVFSAGYSVGIMSSSIRPPASKPSQTVIRPRAAHLSGTASSTDVP   
Sbjct: 19  LRPHLTRLTVFLIVFSAGYSVGIMSSSIRPPASKPSQTVIRPRAAHLSGTASSTDVPASN 78

Query: 79  XXXXXXXXYPRSPPHDLFRFREECGEAIPSDAVVRTLLDKLFDGESPYESFXXXXXXXXX 138
                   YPRSPPHDLFRFREECGEAIPSDAVVRTLLDKLFDGESPYESF         
Sbjct: 79  GSAAAAANYPRSPPHDLFRFREECGEAIPSDAVVRTLLDKLFDGESPYESFPPPHTAALL 138

Query: 139 XXXXXXXXGWGSTGAVFAELIEEVRPDVIVELGAFLGASALHMAAVSKNLSLSPAILCVD 198
                   GWGSTGAVFAELIEEVRPDVIVELGAFLGASALHMAAVSKNLSLSPAILCVD
Sbjct: 139 HPAAARPRGWGSTGAVFAELIEEVRPDVIVELGAFLGASALHMAAVSKNLSLSPAILCVD 198

Query: 199 DFRGWXXXXXXXXXXXXXXXHGDALLLPQFMSNVXXXXXXXXXRVLPLPFSTASALAALC 258
           DFRGW               HGDALLLPQFMSNV         RVLPLPFSTASALAALC
Sbjct: 199 DFRGWPAFRDRFRRDVPPPRHGDALLLPQFMSNVAAAGADATARVLPLPFSTASALAALC 258

Query: 259 HWGVYADLIEVDAGHDFHSAWADINLAWAVLRPGGVMFGHDYFTAADDRGVRRAVTLFAR 318
           HWGVYADLIEVDAGHDFHSAWADINLAWAVLRPGGVMFGHDYFTAADDRGVRRAVTLFAR
Sbjct: 259 HWGVYADLIEVDAGHDFHSAWADINLAWAVLRPGGVMFGHDYFTAADDRGVRRAVTLFAR 318

Query: 319 VKGLTVRPHGQHWVLSPKPPLRRDGR 344
           VKGLTVRPHGQHWVLSPKPPLRRDGR
Sbjct: 319 VKGLTVRPHGQHWVLSPKPPLRRDGR 344



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.323    0.138    0.436 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,232,382
Number of extensions: 368504
Number of successful extensions: 742
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 741
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 242
Effective length of database: 11,709,973
Effective search space: 2833813466
Effective search space used: 2833813466
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 156 (64.7 bits)