BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0517700 Os09g0517700|AK071305
(502 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os09g0517700 Thioesterase superfamily domain containing pro... 857 0.0
>Os09g0517700 Thioesterase superfamily domain containing protein
Length = 502
Score = 857 bits (2214), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 422/465 (90%), Positives = 422/465 (90%)
Query: 38 PRGTNPFQSAAFXXXXXXXXXXXXXXXXIKVVSHXXXXXXXXXXXXXXXXXXXXKPLSLW 97
PRGTNPFQSAAF IKVVSH KPLSLW
Sbjct: 38 PRGTNPFQSAAFSSTTTGDPPPPTMDSPIKVVSHIGGSGGDGGGGAIDAGRSARKPLSLW 97
Query: 98 PGMYHSPVTNALWEARSSIFERMIDAGAAGKXXXXXXXTELLTKTPAGSRTSIVYKFATD 157
PGMYHSPVTNALWEARSSIFERMIDAGAAGK TELLTKTPAGSRTSIVYKFATD
Sbjct: 98 PGMYHSPVTNALWEARSSIFERMIDAGAAGKQQQQPPQTELLTKTPAGSRTSIVYKFATD 157
Query: 158 DILREQYRDPWNEVRIGKLLEDLDALAGTIAVKHCSDEDSTTRPLLLVTASVDKMELKKP 217
DILREQYRDPWNEVRIGKLLEDLDALAGTIAVKHCSDEDSTTRPLLLVTASVDKMELKKP
Sbjct: 158 DILREQYRDPWNEVRIGKLLEDLDALAGTIAVKHCSDEDSTTRPLLLVTASVDKMELKKP 217
Query: 218 ICVDTDLKIAGAVTYVGRSSIDIQIEVTQVDQDSDMQSDPIALTANFTFVARDSMTGKSA 277
ICVDTDLKIAGAVTYVGRSSIDIQIEVTQVDQDSDMQSDPIALTANFTFVARDSMTGKSA
Sbjct: 218 ICVDTDLKIAGAVTYVGRSSIDIQIEVTQVDQDSDMQSDPIALTANFTFVARDSMTGKSA 277
Query: 278 PVNRLSPETEKEKQLFAEREARDKLRKRKREEQKGVFENGINKLHVEAERLNSLLAEGRV 337
PVNRLSPETEKEKQLFAEREARDKLRKRKREEQKGVFENGINKLHVEAERLNSLLAEGRV
Sbjct: 278 PVNRLSPETEKEKQLFAEREARDKLRKRKREEQKGVFENGINKLHVEAERLNSLLAEGRV 337
Query: 338 FSDLPALADRDSILLKDTRLENSLICQPQQRNLHGRIFGGFLMHRAFELAFSTAYAFVGQ 397
FSDLPALADRDSILLKDTRLENSLICQPQQRNLHGRIFGGFLMHRAFELAFSTAYAFVGQ
Sbjct: 338 FSDLPALADRDSILLKDTRLENSLICQPQQRNLHGRIFGGFLMHRAFELAFSTAYAFVGQ 397
Query: 398 RPCFLEVDHVDFLKPVDVGDFLRFKSCVLYTQLDNAEQPLVNVEVVAHVTRPELRKSEVS 457
RPCFLEVDHVDFLKPVDVGDFLRFKSCVLYTQLDNAEQPLVNVEVVAHVTRPELRKSEVS
Sbjct: 398 RPCFLEVDHVDFLKPVDVGDFLRFKSCVLYTQLDNAEQPLVNVEVVAHVTRPELRKSEVS 457
Query: 458 NTFHFTFTVCSDALKNGLKIRHVVPSTEEEARRILERMDAEGLFD 502
NTFHFTFTVCSDALKNGLKIRHVVPSTEEEARRILERMDAEGLFD
Sbjct: 458 NTFHFTFTVCSDALKNGLKIRHVVPSTEEEARRILERMDAEGLFD 502
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.134 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,169,607
Number of extensions: 513382
Number of successful extensions: 1576
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1573
Number of HSP's successfully gapped: 1
Length of query: 502
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 397
Effective length of database: 11,553,331
Effective search space: 4586672407
Effective search space used: 4586672407
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 158 (65.5 bits)