BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0516300 Os09g0516300|AK065222
(900 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os09g0516300 RNA-binding region RNP-1 (RNA recognition moti... 1467 0.0
Os09g0298700 RNA-binding region RNP-1 (RNA recognition moti... 140 6e-33
>Os09g0516300 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 900
Score = 1467 bits (3797), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 739/900 (82%), Positives = 739/900 (82%)
Query: 1 MSSEXXXXXXXXXEAAGREASSSLSPAKEXXXXXXXXXXXXXPETNTLWVGNLPAQAAED 60
MSSE EAAGREASSSLSPAKE PETNTLWVGNLPAQAAED
Sbjct: 1 MSSEPPPPQPQPQEAAGREASSSLSPAKESAAGGGGVGGSGAPETNTLWVGNLPAQAAED 60
Query: 61 DVMASFSPHGALDCVMARAGPRSYAFVLFRSVPEARAALDALQGSKVKGSVVRLEFARPA 120
DVMASFSPHGALDCVMARAGPRSYAFVLFRSVPEARAALDALQGSKVKGSVVRLEFARPA
Sbjct: 61 DVMASFSPHGALDCVMARAGPRSYAFVLFRSVPEARAALDALQGSKVKGSVVRLEFARPA 120
Query: 121 RAVKNLWVGXXXXXXXXXXXXXXXXXXXXVDGIAFSRDQTSAYIDFDKLEDAISAHRALN 180
RAVKNLWVG VDGIAFSRDQTSAYIDFDKLEDAISAHRALN
Sbjct: 121 RAVKNLWVGGISSSISKEELEEEFKKFGKVDGIAFSRDQTSAYIDFDKLEDAISAHRALN 180
Query: 181 GRVLGGQELCVDFQRSRGRAEWLETGSFNGRTGPAKGYGVRNRESNPTNVLWVGFPNTAK 240
GRVLGGQELCVDFQRSRGRAEWLETGSFNGRTGPAKGYGVRNRESNPTNVLWVGFPNTAK
Sbjct: 181 GRVLGGQELCVDFQRSRGRAEWLETGSFNGRTGPAKGYGVRNRESNPTNVLWVGFPNTAK 240
Query: 241 INEEALRQAMAVHGAVTNTKVFPTRQYAFVEFATVGEASNAKKNLDGRLFNDQRIQILFS 300
INEEALRQAMAVHGAVTNTKVFPTRQYAFVEFATVGEASNAKKNLDGRLFNDQRIQILFS
Sbjct: 241 INEEALRQAMAVHGAVTNTKVFPTRQYAFVEFATVGEASNAKKNLDGRLFNDQRIQILFS 300
Query: 301 NSELAPNKLDNPTAVSGFPKSEMYYDDGQYGASDYFDPRRGRSRYFEYSGVPVSGGILPS 360
NSELAPNKLDNPTAVSGFPKSEMYYDDGQYGASDYFDPRRGRSRYFEYSGVPVSGGILPS
Sbjct: 301 NSELAPNKLDNPTAVSGFPKSEMYYDDGQYGASDYFDPRRGRSRYFEYSGVPVSGGILPS 360
Query: 361 PESGNPLLTGRSAQSTFDPREAKRLRLDAAADPYDTRAGSEGLYSAGYXXXXXXXXXXXX 420
PESGNPLLTGRSAQSTFDPREAKRLRLDAAADPYDTRAGSEGLYSAGY
Sbjct: 361 PESGNPLLTGRSAQSTFDPREAKRLRLDAAADPYDTRAGSEGLYSAGYSQRESARSERSS 420
Query: 421 XXXXXXHGTVHRTSYLEHFWRGSIAKGGSPVCRARCLPIRKGVEIPLPDVVNCSARTGLD 480
HGTVHRTSYLEHFWRGSIAKGGSPVCRARCLPIRKGVEIPLPDVVNCSARTGLD
Sbjct: 421 SPAIRIHGTVHRTSYLEHFWRGSIAKGGSPVCRARCLPIRKGVEIPLPDVVNCSARTGLD 480
Query: 481 MLAKHYRDASGFDIVFFLPDSEDDFVSYTEFLRYLGSKSRAGVVKVDGGTTLFLVPPSDF 540
MLAKHYRDASGFDIVFFLPDSEDDFVSYTEFLRYLGSKSRAGVVKVDGGTTLFLVPPSDF
Sbjct: 481 MLAKHYRDASGFDIVFFLPDSEDDFVSYTEFLRYLGSKSRAGVVKVDGGTTLFLVPPSDF 540
Query: 541 LRNVLQVDGPERLYGVVLHIPQMXXXXXXXXXXXXVQRPQLTAPESQPYYDEREIPLQRR 600
LRNVLQVDGPERLYGVVLHIPQM VQRPQLTAPESQPYYDEREIPLQRR
Sbjct: 541 LRNVLQVDGPERLYGVVLHIPQMSAAAPASAPTPAVQRPQLTAPESQPYYDEREIPLQRR 600
Query: 601 YSMITPSNNHHRDADHRGSLREDSLHQLGQILARPRVDEGQVVQPNLAGIPTNAGLQVQP 660
YSMITPSNNHHRDADHRGSLREDSLHQLGQILARPRVDEGQVVQPNLAGIPTNAGLQVQP
Sbjct: 601 YSMITPSNNHHRDADHRGSLREDSLHQLGQILARPRVDEGQVVQPNLAGIPTNAGLQVQP 660
Query: 661 SLQPDMIATLAKLLPSGQSSALVTGQLPLSSTDQPALTQMNDASTLAKVWRPENQAMAST 720
SLQPDMIATLAKLLPSGQSSALVTGQLPLSSTDQPALTQMNDASTLAKVWRPENQAMAST
Sbjct: 661 SLQPDMIATLAKLLPSGQSSALVTGQLPLSSTDQPALTQMNDASTLAKVWRPENQAMAST 720
Query: 721 SSLEQIGNFQHSGQQFSKQAGAVHLPNYGNLAGAQEHPTQHSAYNPEMTXXXXXXXXXXX 780
SSLEQIGNFQHSGQQFSKQAGAVHLPNYGNLAGAQEHPTQHSAYNPEMT
Sbjct: 721 SSLEQIGNFQHSGQQFSKQAGAVHLPNYGNLAGAQEHPTQHSAYNPEMTLNLPPPPPPPT 780
Query: 781 XXXXXXXXXXQVGHSLXXXXXXXXXXXXXXXXXXSNYGQLATVSSSNLQAHHXXXXXXXX 840
QVGHSL SNYGQLATVSSSNLQAHH
Sbjct: 781 LPPSSAILSSQVGHSLPTQMSQQQYQPEQYYMTQSNYGQLATVSSSNLQAHHQQIVATPA 840
Query: 841 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEAERNRKYQATXXXXXXXXXXXXXKPGNQP 900
DEAERNRKYQAT KPGNQP
Sbjct: 841 AQAPVAAQFPPAMQAPAAAQAPVAAQASADEAERNRKYQATLQLAQRLLGQLQQKPGNQP 900
>Os09g0298700 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 1005
Score = 140 bits (352), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 61/123 (49%), Positives = 86/123 (69%)
Query: 440 WRGSIAKGGSPVCRARCLPIRKGVEIPLPDVVNCSARTGLDMLAKHYRDASGFDIVFFLP 499
W G+IAKGG+P+CRARC P+ K + LP+ ++C+ART L+ML+KHY A+ +VFF+P
Sbjct: 498 WDGTIAKGGTPICRARCFPVGKVLNFMLPEFLDCTARTSLEMLSKHYYQAASSWVVFFVP 557
Query: 500 DSEDDFVSYTEFLRYLGSKSRAGVVKVDGGTTLFLVPPSDFLRNVLQVDGPERLYGVVLH 559
+++ D +Y EF+ YLG K RA V K+ ++LFLVPPSDF VL+V G + GV+L
Sbjct: 558 ENDADMAAYNEFMNYLGDKQRAAVCKLGERSSLFLVPPSDFSEQVLRVPGKVSISGVILK 617
Query: 560 IPQ 562
Q
Sbjct: 618 FEQ 620
Score = 99.4 bits (246), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 59/197 (29%), Positives = 94/197 (47%), Gaps = 18/197 (9%)
Query: 124 KNLWVGXXXXXXXXXXXXXXXXXXXXVDGIAFSRDQTSAYIDFDKLEDAISAHRALNGRV 183
++LWVG V+GI+ ++ A++ F + EDA++A R L G
Sbjct: 49 RHLWVGSLSPGVAAADLSELFLRCGDVEGISRDPGRSFAFVTFAREEDAVAAVRELQGIH 108
Query: 184 LGGQELCVDF---------------QRSRGRAEWLETGSFNGRTGPAKGY--GVRNRESN 226
L G + ++F + + + E G N ++ P K R+R +
Sbjct: 109 LRGAPIRIEFSKGDKGSSSSMDDRYSQHADQRRFTERGR-NQQSSPEKSTDKSKRSRPAE 167
Query: 227 PTNVLWVGFPNTAKINEEALRQAMAVHGAVTNTKVFPTRQYAFVEFATVGEASNAKKNLD 286
P+ VLW+GFP K++E L +A + G V FP R YAFV++ T+ A AK+ L
Sbjct: 168 PSEVLWIGFPVGLKVDEATLWEAFSPFGEVVKITTFPGRTYAFVQYTTIAAACRAKETLQ 227
Query: 287 GRLFNDQRIQILFSNSE 303
G +FN+ R+ I FS S+
Sbjct: 228 GNIFNNPRVSICFSRSD 244
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.315 0.132 0.387
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 26,271,162
Number of extensions: 1092188
Number of successful extensions: 2635
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 2626
Number of HSP's successfully gapped: 3
Length of query: 900
Length of database: 17,035,801
Length adjustment: 110
Effective length of query: 790
Effective length of database: 11,292,261
Effective search space: 8920886190
Effective search space used: 8920886190
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 161 (66.6 bits)