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Os09g0516300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : RNA-binding region RNP-1 (RNA recognition motif) domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.99 (0.0241) R2 : 0.263
β1 : -0.947 (0.0883) R2dD : 0.193 R2D : 0.214
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.243 (0.0515) R2dN8 : 0.0482 R2N8 : 0.0696
σ : 0.453
deviance : 93.85
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C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
71.4 0.397 8.99 -1.02 0.381 -0.275 -0.737 -1.93 0.229 7.87 40.8 518 -- --
75.86 0.406 8.99 -0.933 0.401 -0.273 -0.458 -- 0.266 7.91 41.58 518 -- --
72.69 0.397 8.99 -0.99 0.402 -0.293 -- -1.85 0.24 8 40.79 452 -- --
76.23 0.407 8.97 -0.938 0.39 -0.359 -- -- 0.276 8.07 42.47 467 -- --
79.89 0.416 9 -0.948 -- -0.372 -- -1.68 0.275 -- 40.82 552 -- --
78.88 0.416 8.98 -0.949 0.527 -- -0.304 -- 0.233 7.33 -- -- -- --
79.12 0.417 8.98 -0.957 0.527 -- -- -- 0.234 7.23 -- -- -- --
82.77 0.424 8.98 -0.906 -- -0.516 -- -- 0.311 -- 35.35 630 -- --
98.03 0.461 8.96 -- 0.383 -0.497 -- -- 0.337 9.11 40 519 -- --
93.85 0.453 8.99 -0.947 -- -- -- -- 0.243 -- -- -- -- --
103.24 0.475 8.96 -- 0.518 -- -- -- 0.34 7.35 -- -- -- --
102.96 0.473 8.96 -- -- -0.596 -- -- 0.42 -- 40.02 660 -- --
117.51 0.506 8.97 -- -- -- -- -- 0.348 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 69.20 wind 7.0 1440 < th dose independent rect. 24 1
2 69.52 wind 1.0 270 > th dose independent rect. 24 17
3 69.71 humidity 50.0 270 > th dose independent rect. 6 17
4 69.74 atmosphere 1000.0 10 > th dose independent rect. 15 16
6 69.77 radiation 20.0 10 < th dose dependent sin 4 NA
10 69.84 radiation 10.0 10 < th dose independent rect. 24 18
11 69.87 wind 7.0 1440 < th dose independent rect. 24 3
16 69.95 radiation 20.0 10 < th dose dependent rect. 1 17
18 69.99 humidity 70.0 10 > th dose independent rect. 18 8
21 70.02 humidity 70.0 90 > th dose independent rect. 18 7
25 70.08 wind 7.0 1440 < th dose independent rect. 21 7
32 70.12 humidity 50.0 270 > th dose independent rect. 15 9
41 70.22 wind 7.0 1440 < th dose independent rect. 21 12
43 70.26 atmosphere 1000.0 270 > th dose independent rect. 23 7
52 70.32 humidity 90.0 270 < th dose dependent rect. 12 5
53 70.33 wind 7.0 1440 > th dose independent rect. 24 8
66 70.43 radiation 10.0 90 < th dose independent rect. 24 10
67 70.43 wind 5.0 1440 > th dose dependent rect. 2 1
69 70.44 wind 7.0 1440 > th dose independent rect. 24 5
72 70.44 wind 5.0 1440 > th dose dependent rect. 24 5
74 70.45 humidity 50.0 270 > th dose independent rect. 14 23
79 70.47 wind 7.0 1440 > th dose dependent rect. 24 8
81 70.48 radiation 20.0 90 < th dose dependent rect. 24 10
112 70.61 humidity 50.0 270 > th dose independent rect. 3 23
123 70.65 radiation 30.0 10 < th dose dependent rect. 24 10
136 70.69 radiation 10.0 10 > th dose independent sin 5 NA
145 70.72 radiation 10.0 10 > th dose independent rect. 6 9
162 70.76 atmosphere 1000.0 270 > th dose independent rect. 13 17
164 70.77 wind 7.0 1440 > th dose independent rect. 21 11
185 70.85 radiation 10.0 10 < th dose independent sin 3 NA
186 70.85 humidity 70.0 270 > th dose independent rect. 15 9
189 70.86 wind 7.0 1440 > th dose independent rect. 21 8
203 70.92 humidity 50.0 270 < th dose independent rect. 13 3
205 70.92 radiation 10.0 10 < th dose independent rect. 24 11
222 70.96 humidity 50.0 270 < th dose dependent rect. 13 3
247 71.02 atmosphere 995.0 10 > th dose dependent rect. 7 8
255 71.05 atmosphere 995.0 270 > th dose independent rect. 11 7
258 71.05 wind 7.0 1440 > th dose dependent rect. 21 12
271 71.10 radiation 10.0 270 < th dose independent rect. 23 8
272 71.10 radiation 10.0 10 < th dose independent rect. 24 14
323 71.19 wind 7.0 270 < th dose independent rect. 18 17
339 71.22 temperature 30.0 90 < th dose independent rect. 18 7
380 71.25 wind 1.0 270 > th dose independent rect. 11 7
399 71.26 humidity 90.0 270 < th dose independent rect. 11 7
438 71.31 atmosphere 995.0 270 > th dose independent rect. 24 17
446 71.32 radiation 40.0 720 > th dose independent rect. 13 22
452 71.33 wind 1.0 270 > th dose independent rect. 23 8
470 71.35 radiation 10.0 270 < th dose dependent sin 8 NA
475 71.35 radiation 10.0 270 < th dose dependent rect. 23 14
486 71.38 humidity 70.0 270 < th dose independent rect. 12 5
493 71.39 radiation 20.0 43200 < th dose dependent rect. 19 8
500 71.40 temperature 30.0 90 < th dose dependent rect. 1 6
504 71.41 wind 7.0 270 < th dose independent rect. 17 7
508 71.42 radiation 40.0 270 < th dose independent rect. 18 17
509 71.42 wind 7.0 270 < th dose independent rect. 17 19
515 71.43 radiation 10.0 270 < th dose independent rect. 17 7
517 71.43 humidity 90.0 30 < th dose dependent rect. 15 6
522 71.44 precipitation 0.1 270 < th dose independent rect. 4 9
525 71.44 precipitation 0.1 270 < th dose dependent rect. 4 9
529 71.45 wind 1.0 270 > th dose independent rect. 12 17
536 71.46 humidity 80.0 270 < th dose dependent rect. 12 16
552 71.50 humidity 50.0 270 < th dose independent sin 14 NA
562 71.51 humidity 50.0 10 > th dose dependent rect. 18 8
574 71.53 wind 1.0 270 > th dose independent rect. 17 7
584 71.55 humidity 50.0 270 < th dose dependent sin 13 NA
588 71.55 humidity 50.0 90 > th dose dependent rect. 17 8
598 71.57 wind 9.0 270 < th dose independent rect. 5 8
614 71.58 radiation 10.0 270 < th dose dependent rect. 15 9
616 71.59 radiation 1.0 270 > th dose independent rect. 4 8
631 71.59 precipitation 0.1 270 < th dose independent rect. 18 17
634 71.59 radiation 20.0 270 < th dose dependent rect. 17 7
636 71.59 precipitation 0.1 270 < th dose dependent rect. 18 17
662 71.63 radiation 1.0 1440 < th dose dependent rect. 19 8
666 71.64 temperature 10.0 270 > th dose independent rect. 17 7
667 71.64 atmosphere 1010.0 270 < th dose independent rect. 11 7
671 71.64 temperature 10.0 270 > th dose independent rect. 5 8
672 71.64 atmosphere 995.0 270 > th dose independent rect. 5 8
673 71.64 atmosphere 1015.0 270 < th dose independent rect. 5 8
683 71.64 temperature 10.0 270 > th dose independent rect. 13 15
687 71.64 temperature 10.0 270 > th dose independent rect. 24 17
688 71.64 atmosphere 1015.0 270 < th dose independent rect. 24 17
703 71.66 temperature 10.0 270 > th dose independent rect. 11 7
705 71.66 precipitation 0.1 270 < th dose independent rect. 11 7
707 71.66 radiation 10.0 270 < th dose independent rect. 15 9
710 71.66 temperature 10.0 270 > th dose independent rect. 18 17
714 71.66 precipitation 0.1 270 < th dose dependent rect. 11 7
729 71.68 wind 9.0 270 < th dose independent rect. 6 17
749 71.70 atmosphere 1005.0 90 > th dose independent rect. 7 8
768 71.71 wind 9.0 10 < th dose independent rect. 7 8
771 71.71 precipitation 0.1 30 < th dose independent rect. 15 16
780 71.71 precipitation 0.1 30 < th dose dependent rect. 15 16
809 71.74 radiation 30.0 30 < th dose independent rect. 13 18
811 71.74 humidity 60.0 270 > th dose independent rect. 17 19
819 71.75 precipitation 0.1 10 < th dose independent rect. 7 8
826 71.75 precipitation 0.1 10 < th dose dependent rect. 7 8
848 71.78 radiation 40.0 720 > th dose independent rect. 9 5
851 71.78 precipitation 0.1 270 < th dose independent rect. 17 7
860 71.78 precipitation 0.1 270 < th dose dependent rect. 17 7
870 71.79 radiation 1.0 10 < th dose dependent rect. 18 8
876 71.80 humidity 50.0 270 > th dose independent rect. 5 8
890 71.81 temperature 10.0 10 > th dose independent rect. 7 8
892 71.81 atmosphere 995.0 10 > th dose independent rect. 7 8
893 71.81 atmosphere 1015.0 10 < th dose independent rect. 7 8
906 71.81 temperature 10.0 10 > th dose independent rect. 15 16
929 71.82 radiation 40.0 10 < th dose independent rect. 15 16
934 71.82 atmosphere 995.0 90 > th dose dependent rect. 24 7
967 71.84 precipitation 0.1 270 < th dose independent rect. 24 17
975 71.84 precipitation 0.1 270 < th dose dependent rect. 24 17
985 71.85 atmosphere 1015.0 10 < th dose independent rect. 15 16