BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0514100 Os09g0514100|AK103415
         (487 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os09g0514100  FAD dependent oxidoreductase family protein         844   0.0  

>Os09g0514100 FAD dependent oxidoreductase family protein
          Length = 487

 Score =  844 bits (2181), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 417/460 (90%), Positives = 417/460 (90%)

Query: 28  RVLRFSVRDPWRRRRGQRLPLHALRSQRPEPAPASASHHDVVVVGAGIIGLSIARHLLLH 87
           RVLRFSVRDPWRRRRGQRLPLHALRSQRPEPAPASASHHDVVVVGAGIIGLSIARHLLLH
Sbjct: 28  RVLRFSVRDPWRRRRGQRLPLHALRSQRPEPAPASASHHDVVVVGAGIIGLSIARHLLLH 87

Query: 88  TPLSVAVADAAVPCTGATGAGQGYLWMSHRTPGSDTWELAVRSKQLWXXXXXXXXXXXXX 147
           TPLSVAVADAAVPCTGATGAGQGYLWMSHRTPGSDTWELAVRSKQLW             
Sbjct: 88  TPLSVAVADAAVPCTGATGAGQGYLWMSHRTPGSDTWELAVRSKQLWEELAAEVDGLGGG 147

Query: 148 XXXXXXXWMRTGSLLVGRTSEEMATLEERTKALSQAGIRAECLSAASLHALEPELYVGHD 207
                  WMRTGSLLVGRTSEEMATLEERTKALSQAGIRAECLSAASLHALEPELYVGHD
Sbjct: 148 GARERLGWMRTGSLLVGRTSEEMATLEERTKALSQAGIRAECLSAASLHALEPELYVGHD 207

Query: 208 GGAMFLPEDCQIDAFQAVSLIEKTNGSYSSEGRYMEIYNDPAMSLVRSETTGTVQGVQTS 267
           GGAMFLPEDCQIDAFQAVSLIEKTNGSYSSEGRYMEIYNDPAMSLVRSETTGTVQGVQTS
Sbjct: 208 GGAMFLPEDCQIDAFQAVSLIEKTNGSYSSEGRYMEIYNDPAMSLVRSETTGTVQGVQTS 267

Query: 268 KHILYGRKAIVIASGAWTRTLLRSFLEPNPTLDIPVMPRKGHXXXXXXXXXXXXNHGLME 327
           KHILYGRKAIVIASGAWTRTLLRSFLEPNPTLDIPVMPRKGH            NHGLME
Sbjct: 268 KHILYGRKAIVIASGAWTRTLLRSFLEPNPTLDIPVMPRKGHLLVLDKFDKLKLNHGLME 327

Query: 328 LGYVGHQVAKXXXXXXXXXXXEDEHGALSISMTATMNTKGNLILGSSREFKGFSREVDMS 387
           LGYVGHQVAK           EDEHGALSISMTATMNTKGNLILGSSREFKGFSREVDMS
Sbjct: 328 LGYVGHQVAKSSGTPLSSESSEDEHGALSISMTATMNTKGNLILGSSREFKGFSREVDMS 387

Query: 388 ILKCIWDRAAEFFPTLKNVHLDIDENTEIRIGHRPFMPDGKPVIGSVPDLPNVLIATGHE 447
           ILKCIWDRAAEFFPTLKNVHLDIDENTEIRIGHRPFMPDGKPVIGSVPDLPNVLIATGHE
Sbjct: 388 ILKCIWDRAAEFFPTLKNVHLDIDENTEIRIGHRPFMPDGKPVIGSVPDLPNVLIATGHE 447

Query: 448 GSGLALALGTAEMVTDMILGNPGKVDFSPFSIKDRFSAYD 487
           GSGLALALGTAEMVTDMILGNPGKVDFSPFSIKDRFSAYD
Sbjct: 448 GSGLALALGTAEMVTDMILGNPGKVDFSPFSIKDRFSAYD 487



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.319    0.134    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 15,057,133
Number of extensions: 628755
Number of successful extensions: 1749
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1748
Number of HSP's successfully gapped: 1
Length of query: 487
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 382
Effective length of database: 11,553,331
Effective search space: 4413372442
Effective search space used: 4413372442
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 158 (65.5 bits)