BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0495200 Os09g0495200|AK102989
(322 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os09g0495200 Conserved hypothetical protein 576 e-164
Os09g0494800 116 3e-26
Os09g0495900 108 4e-24
Os09g0496500 92 4e-19
Os04g0642300 76 3e-14
Os09g0495000 72 7e-13
Os09g0495300 70 3e-12
Os03g0145700 Conserved hypothetical protein 68 1e-11
>Os09g0495200 Conserved hypothetical protein
Length = 322
Score = 576 bits (1484), Expect = e-164, Method: Compositional matrix adjust.
Identities = 289/322 (89%), Positives = 289/322 (89%)
Query: 1 MLSXXXXXXXXXXXKTSHARPCNPGYPRRSSVPMTGGDATRPAVARALRLPGSGGGAGFQ 60
MLS KTSHARPCNPGYPRRSSVPMTGGDATRPAVARALRLPGSGGGAGFQ
Sbjct: 1 MLSARRAGAGGAAGKTSHARPCNPGYPRRSSVPMTGGDATRPAVARALRLPGSGGGAGFQ 60
Query: 61 RREPHRWLRPCSSSRSGDGAAAVLASRSGSSDMGLGVSSFSPCSLXXXXXXXXXXXXWCS 120
RREPHRWLRPCSSSRSGDGAAAVLASRSGSSDMGLGVSSFSPCSL WCS
Sbjct: 61 RREPHRWLRPCSSSRSGDGAAAVLASRSGSSDMGLGVSSFSPCSLPRRVDAPRRRPVWCS 120
Query: 121 XXXXXXXXXXRVEVQSVRKRRMSEEWEALKAAIADMFRPLLRNLADICSLRSAYDFEDYQ 180
RVEVQSVRKRRMSEEWEALKAAIADMFRPLLRNLADICSLRSAYDFEDYQ
Sbjct: 121 PAAPPPPPPPRVEVQSVRKRRMSEEWEALKAAIADMFRPLLRNLADICSLRSAYDFEDYQ 180
Query: 181 IGMLFGAFLGYVGCYQLWKAAPSVFVDAALAFVFYKLSVVSSELHRQRKTNSLITRLKFG 240
IGMLFGAFLGYVGCYQLWKAAPSVFVDAALAFVFYKLSVVSSELHRQRKTNSLITRLKFG
Sbjct: 181 IGMLFGAFLGYVGCYQLWKAAPSVFVDAALAFVFYKLSVVSSELHRQRKTNSLITRLKFG 240
Query: 241 TILIMVMKDIKKNYVLLDIIRMPVFFLYICAFVFDVAGMKKYARRSLISLFNLLKSRGGI 300
TILIMVMKDIKKNYVLLDIIRMPVFFLYICAFVFDVAGMKKYARRSLISLFNLLKSRGGI
Sbjct: 241 TILIMVMKDIKKNYVLLDIIRMPVFFLYICAFVFDVAGMKKYARRSLISLFNLLKSRGGI 300
Query: 301 QEIYRIMWYPGYISPYDDSADW 322
QEIYRIMWYPGYISPYDDSADW
Sbjct: 301 QEIYRIMWYPGYISPYDDSADW 322
>Os09g0494800
Length = 207
Score = 116 bits (290), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 58/115 (50%), Positives = 77/115 (66%)
Query: 147 EALKAAIADMFRPLLRNLADICSLRSAYDFEDYQIGMLFGAFLGYVGCYQLWKAAPSVFV 206
EA++ A A + RPL+ N + SL++A+D EDY IGM GA + VGCYQL K PS+FV
Sbjct: 93 EAVRDAAAYVLRPLVDNFNRLFSLKTAFDIEDYNIGMPTGALIACVGCYQLLKMNPSLFV 152
Query: 207 DAALAFVFYKLSVVSSELHRQRKTNSLITRLKFGTILIMVMKDIKKNYVLLDIIR 261
DA L + FYKLSV+SS++ +Q N ITR+K LI + KD KN+V LD I+
Sbjct: 153 DAVLGYAFYKLSVLSSQVRKQGFPNEYITRIKTIIALIFIAKDFHKNFVPLDYIK 207
>Os09g0495900
Length = 209
Score = 108 bits (271), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 57/135 (42%), Positives = 85/135 (62%)
Query: 158 RPLLRNLADICSLRSAYDFEDYQIGMLFGAFLGYVGCYQLWKAAPSVFVDAALAFVFYKL 217
RPLL D+ L S + E++ +GM FGA + + +QL +AAPSV +DAALA+ FYKL
Sbjct: 58 RPLLELARDVRGLASVFHVEEFHVGMPFGAAMTCLALWQLRRAAPSVCLDAALAYAFYKL 117
Query: 218 SVVSSELHRQRKTNSLITRLKFGTILIMVMKDIKKNYVLLDIIRMPVFFLYICAFVFDVA 277
SV++++L RQ L+ RLK +++M KDI KN + LD IR+ VFF+Y + ++
Sbjct: 118 SVMAADLRRQGFCPDLLIRLKLVIMVVMYFKDINKNIIPLDYIRLAVFFVYFSSVYSEIK 177
Query: 278 GMKKYARRSLISLFN 292
G KKY + + +F
Sbjct: 178 GAKKYMKYFIPMMFK 192
>Os09g0496500
Length = 473
Score = 92.4 bits (228), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 43/100 (43%), Positives = 72/100 (72%)
Query: 192 VGCYQLWKAAPSVFVDAALAFVFYKLSVVSSELHRQRKTNSLITRLKFGTILIMVMKDIK 251
+ +QLW+AAP+V +DAA+A+ FYKLSV++S+L R+ + L+ RLKF +IM++KD
Sbjct: 4 LALWQLWRAAPAVCLDAAMAYEFYKLSVMASDLRRRGFSPDLLIRLKFVITIIMLIKDFH 63
Query: 252 KNYVLLDIIRMPVFFLYICAFVFDVAGMKKYARRSLISLF 291
K + LD IR+ +FF+Y+ + +++ G+KKYA+ + +F
Sbjct: 64 KKIIPLDYIRLAIFFMYLSSVWWEMKGLKKYAKYCIPLIF 103
>Os04g0642300
Length = 282
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 87/171 (50%), Gaps = 8/171 (4%)
Query: 139 KRRMSEEWEALKAAIADMFRPLLRNLADICSLRSAYDFEDYQIGMLFGAFLGYVGCYQLW 198
+ M W AL ++ P+ R L +I + + + + IG+L GA L G QL
Sbjct: 103 REEMDAIWHAL---VSGPLEPVFRVLREIGAAGNLFRCRSFHIGILSGALLVIAGFSQLC 159
Query: 199 KAAPSVFVDAALAFVFYKLSVVSSELHRQRKTNSLITRLKFGTILIMVMKDIKKNYVLLD 258
P +FVD L ++FYKLS++++EL R + N++ R++ + ++ KD +
Sbjct: 160 NMTPFLFVDIVLGYMFYKLSILAAELQRNGRANNICARIQLVLLFVLSFKDSRGYQGTYG 219
Query: 259 IIRMPVFF----LYICAFVFDVAGMKKYARRSLISLFNLLKSRGGIQEIYR 305
++ ++F LY +++ G Y R + ++ +L+S+GG+ ++ +
Sbjct: 220 VLAGLIWFLNVQLYFRTVYYEMVG-TNYIRLFWLGVYRILQSKGGLIKVAK 269
>Os09g0495000
Length = 357
Score = 71.6 bits (174), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 55/106 (51%), Gaps = 21/106 (19%)
Query: 156 MFRPLLRNLADICSLRSAYDFEDYQIGMLFGAFLGYVGCYQLWKAAPSVFVDAALAFVFY 215
+ RPLL N + SL + +D EDY +GM F DAAL + FY
Sbjct: 122 VLRPLLDNFNHLRSLNTVFDTEDYHVGMPF---------------------DAALGYTFY 160
Query: 216 KLSVVSSELHRQRKTNSLITRLKFGTILIMVMKDIKKNYVLLDIIR 261
+L +VSS+L R+ +N LI R+KF +L+M + DI LD IR
Sbjct: 161 RLCIVSSQLRRRGFSNDLIIRVKFVVMLVMAINDINNCIYWLDAIR 206
>Os09g0495300
Length = 180
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 40/60 (66%)
Query: 156 MFRPLLRNLADICSLRSAYDFEDYQIGMLFGAFLGYVGCYQLWKAAPSVFVDAALAFVFY 215
+FRPL N D+ A+D E+Y +GM FGA + + YQLWKAAP + +DAALAF FY
Sbjct: 121 VFRPLADNFGDMRGFEYAHDTEEYHLGMPFGALMACIAVYQLWKAAPWLCLDAALAFAFY 180
>Os03g0145700 Conserved hypothetical protein
Length = 257
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 86/171 (50%), Gaps = 5/171 (2%)
Query: 143 SEEWEAL-KAAIADMFRPLLRNLADICSLR-SAYDFEDYQIGMLFGAFLGYVGCYQLWKA 200
EE EA+ A + + RP+L +I + + + + G+ G + + Q K
Sbjct: 83 QEELEAIWNALVEEPLRPILTAFQEIKATNGNVFRCRCFHAGITSGLLVLVIRICQFHKL 142
Query: 201 APSVFVDAALAFVFYKLSVVSSELHRQRKTNSLITRLKFGTILIMVMKD--IKKN-YVLL 257
AP + VD L +V Y++SV+++EL R K N++ R++F +L++ + IK + +
Sbjct: 143 APGLCVDFVLGYVCYRMSVLAAELKRNGKANNICARIQFVIMLLLFWANNPIKDSCFYFT 202
Query: 258 DIIRMPVFFLYICAFVFDVAGMKKYARRSLISLFNLLKSRGGIQEIYRIMW 308
+I +Y CA ++ G+K AR + +L + GG+ ++ + M+
Sbjct: 203 QLIWYFALHVYSCAVFYEYIGVKHPARYLEAMFYTILTTNGGLMKVLKFMF 253
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.325 0.138 0.431
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,449,633
Number of extensions: 468498
Number of successful extensions: 2652
Number of sequences better than 1.0e-10: 8
Number of HSP's gapped: 2651
Number of HSP's successfully gapped: 8
Length of query: 322
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 221
Effective length of database: 11,762,187
Effective search space: 2599443327
Effective search space used: 2599443327
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 156 (64.7 bits)