BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0481200 Os09g0481200|AK098847
         (141 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os09g0481200  Similar to Photosystem I reaction center subun...   237   2e-63
AJ417528                                                          151   1e-37

>Os09g0481200 Similar to Photosystem I reaction center subunit V (PSI-G)
           (Photosystem I 9 kDa protein) (Fragment)
          Length = 141

 Score =  237 bits (604), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 120/141 (85%), Positives = 120/141 (85%)

Query: 1   MAATSLSPPTVAGLRLAPSPRVXXXXXXXXXXXXXXXXXXXXXELSPSLVISLSTGVSLF 60
           MAATSLSPPTVAGLRLAPSPRV                     ELSPSLVISLSTGVSLF
Sbjct: 1   MAATSLSPPTVAGLRLAPSPRVRSPSVAFRAAPARRRSVAARAELSPSLVISLSTGVSLF 60

Query: 61  LGRFVFFNFQRENVAKQVPEQNGKTHFDAGDERAKEFAGLLRSNDPVGFNLVDVLAWGSL 120
           LGRFVFFNFQRENVAKQVPEQNGKTHFDAGDERAKEFAGLLRSNDPVGFNLVDVLAWGSL
Sbjct: 61  LGRFVFFNFQRENVAKQVPEQNGKTHFDAGDERAKEFAGLLRSNDPVGFNLVDVLAWGSL 120

Query: 121 GHIVAYYILATCSNGYNPNFF 141
           GHIVAYYILATCSNGYNPNFF
Sbjct: 121 GHIVAYYILATCSNGYNPNFF 141



>AJ417528 
          Length = 74

 Score =  151 bits (382), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 71/71 (100%), Positives = 71/71 (100%)

Query: 71  RENVAKQVPEQNGKTHFDAGDERAKEFAGLLRSNDPVGFNLVDVLAWGSLGHIVAYYILA 130
           RENVAKQVPEQNGKTHFDAGDERAKEFAGLLRSNDPVGFNLVDVLAWGSLGHIVAYYILA
Sbjct: 4   RENVAKQVPEQNGKTHFDAGDERAKEFAGLLRSNDPVGFNLVDVLAWGSLGHIVAYYILA 63

Query: 131 TCSNGYNPNFF 141
           TCSNGYNPNFF
Sbjct: 64  TCSNGYNPNFF 74



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.321    0.137    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,162,059
Number of extensions: 139400
Number of successful extensions: 210
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 209
Number of HSP's successfully gapped: 2
Length of query: 141
Length of database: 17,035,801
Length adjustment: 91
Effective length of query: 50
Effective length of database: 12,284,327
Effective search space: 614216350
Effective search space used: 614216350
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 151 (62.8 bits)