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Os09g0481200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Photosystem I reaction center subunit V (PSI-G) (Photosystem I 9 kDa protein) (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 16.7 (0.0204) R2 : 0.545
β1 : -0.8 (0.0746) R2dD : 0.119 R2D : 0.103
β2 : 1.11 (0.0526) R2dC : 0.442 R2C : 0.429
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0686 (0.0435) R2dN8 : 0.00333 R2N8 : -0.00677
σ : 0.383
deviance : 66.95
__
_____
C
peak time of C : 4.74
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
53.4 0.343 16.6 -0.798 0.998 0.518 1.42 0.93 -0.0426 6.93 0.2057 73 -- --
56.13 0.349 16.7 -0.72 1.06 0.337 1.59 -- -0.0658 5.75 0.436 39 -- --
58.16 0.355 16.6 -0.773 1 0.518 -- 0.717 -0.0367 6.92 0.17 75 -- --
60.68 0.363 16.6 -0.765 1.05 0.531 -- -- -0.029 6.99 0.17 65 -- --
58.52 0.356 16.7 -0.806 -- 1.17 -- 1.4 -0.0879 -- 2.989 594 -- --
58.21 0.358 16.6 -0.791 1.09 -- 1.82 -- -0.0593 4.67 -- -- -- --
66.95 0.383 16.7 -0.8 1.11 -- -- -- -0.0686 4.74 -- -- -- --
65.18 0.376 16.7 -0.744 -- 1.23 -- -- 5.21e-05 -- 4.176 605 -- --
75.04 0.403 16.6 -- 1.06 0.563 -- -- -0.0354 7.05 0.1126 39 -- --
131.67 0.536 16.7 -0.759 -- -- -- -- -0.0398 -- -- -- -- --
83.84 0.428 16.6 -- 1.09 -- -- -- 0.0206 4.76 -- -- -- --
79.51 0.415 16.6 -- -- 1.24 -- -- 0.0712 -- 3 620 -- --
146.86 0.566 16.6 -- -- -- -- -- 0.0444 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 47.95 humidity 50.0 30 > th dose independent rect. 18 22
3 48.61 atmosphere 1000.0 10 > th dose dependent rect. 15 3
9 49.17 humidity 50.0 30 > th dose independent rect. 18 20
12 49.25 temperature 30.0 90 < th dose independent rect. 16 1
15 49.36 wind 5.0 30 > th dose independent rect. 16 2
30 49.73 wind 3.0 30 > th dose dependent rect. 16 2
33 49.82 radiation 20.0 90 < th dose independent rect. 16 1
34 49.84 humidity 50.0 90 > th dose independent rect. 16 1
44 50.03 radiation 1.0 90 > th dose independent rect. 16 1
45 50.06 atmosphere 1000.0 30 > th dose independent rect. 14 4
50 50.13 radiation 40.0 90 < th dose dependent rect. 16 1
59 50.38 wind 1.0 90 > th dose independent rect. 16 1
60 50.39 temperature 10.0 90 > th dose independent rect. 16 1
62 50.39 atmosphere 1010.0 90 < th dose independent rect. 16 1
64 50.39 radiation 40.0 90 < th dose independent rect. 16 1
65 50.39 temperature 10.0 90 > th dose independent rect. 17 23
67 50.40 wind 9.0 90 < th dose independent rect. 16 1
73 50.45 temperature 10.0 30 > th dose dependent rect. 18 22
74 50.46 atmosphere 995.0 90 > th dose independent rect. 16 1
75 50.47 humidity 90.0 90 < th dose independent rect. 16 1
76 50.49 precipitation 0.1 90 < th dose independent rect. 16 1
77 50.49 precipitation 0.1 90 < th dose dependent rect. 16 1
82 50.56 radiation 10.0 10 < th dose independent rect. 16 2
88 50.69 humidity 50.0 10 > th dose independent rect. 10 4
94 50.76 temperature 30.0 10 < th dose independent rect. 16 2
100 50.79 humidity 50.0 720 > th dose independent rect. 17 20
102 50.81 temperature 30.0 10 < th dose independent rect. 14 4
103 50.82 temperature 15.0 10 > th dose independent rect. 18 22
111 50.93 radiation 20.0 270 > th dose independent rect. 13 2
113 50.93 precipitation 0.1 90 < th dose independent rect. 17 23
115 50.93 precipitation 0.1 90 < th dose dependent rect. 17 23
117 50.95 temperature 10.0 30 > th dose dependent rect. 18 20
124 50.99 wind 9.0 10 < th dose independent rect. 16 2
125 50.99 wind 9.0 90 < th dose independent rect. 17 23
130 51.03 humidity 60.0 270 > th dose independent rect. 10 1
132 51.05 temperature 10.0 10 > th dose independent rect. 16 2
136 51.05 atmosphere 1010.0 10 < th dose independent rect. 16 2
138 51.05 radiation 40.0 10 < th dose independent rect. 16 2
139 51.05 precipitation 0.1 10 < th dose independent rect. 16 2
140 51.05 humidity 80.0 30 < th dose independent rect. 14 4
142 51.05 precipitation 0.1 10 < th dose dependent rect. 16 2
143 51.07 radiation 40.0 10 < th dose dependent rect. 14 4
149 51.10 humidity 50.0 10 > th dose independent rect. 16 2
150 51.11 radiation 40.0 10 < th dose dependent rect. 16 2
151 51.12 temperature 15.0 30 > th dose independent rect. 18 20
152 51.13 wind 1.0 10 > th dose independent rect. 16 2
156 51.14 humidity 80.0 10 < th dose independent rect. 16 2
157 51.16 temperature 10.0 90 > th dose dependent rect. 16 1
172 51.18 radiation 1.0 90 > th dose dependent rect. 16 1
200 51.29 wind 1.0 30 > th dose independent rect. 14 4
201 51.29 humidity 50.0 90 > th dose dependent rect. 16 1
203 51.31 wind 9.0 10 < th dose independent rect. 18 22
204 51.31 temperature 25.0 90 > th dose dependent rect. 16 1
209 51.33 wind 9.0 90 < th dose dependent rect. 16 1
218 51.36 radiation 40.0 30 < th dose independent rect. 14 4
219 51.36 radiation 10.0 10 < th dose dependent rect. 18 13
223 51.38 temperature 10.0 30 > th dose independent rect. 14 4
225 51.38 atmosphere 1010.0 30 < th dose independent rect. 14 4
229 51.39 wind 9.0 30 < th dose independent rect. 14 4
230 51.39 atmosphere 995.0 30 > th dose independent rect. 18 20
233 51.40 radiation 20.0 90 < th dose dependent sin 13 NA
240 51.42 atmosphere 995.0 10 > th dose independent rect. 18 22
246 51.45 humidity 80.0 270 < th dose independent rect. 13 2
249 51.45 precipitation 0.1 30 < th dose independent rect. 14 4
259 51.45 precipitation 0.1 30 < th dose dependent rect. 14 4
261 51.47 precipitation 0.1 10 < th dose independent rect. 18 22
262 51.47 precipitation 0.1 10 < th dose dependent rect. 18 22
269 51.50 wind 9.0 30 < th dose independent rect. 18 20
272 51.51 humidity 50.0 270 > th dose independent rect. 1 12
288 51.56 atmosphere 1015.0 10 < th dose independent rect. 18 22
300 51.60 temperature 30.0 10 < th dose dependent rect. 16 1
307 51.61 atmosphere 1015.0 30 < th dose independent rect. 18 20
309 51.62 atmosphere 1000.0 270 > th dose independent rect. 13 2
323 51.66 temperature 10.0 1440 > th dose independent rect. 17 1
327 51.66 radiation 30.0 1440 < th dose independent rect. 17 1
335 51.66 temperature 10.0 1440 > th dose independent rect. 18 23
340 51.67 precipitation 0.1 30 < th dose independent rect. 18 20
344 51.67 precipitation 0.1 30 < th dose dependent rect. 18 20
356 51.69 temperature 15.0 90 > th dose independent rect. 18 11
375 51.71 radiation 1.0 270 > th dose dependent rect. 13 2
379 51.72 wind 9.0 90 < th dose independent rect. 5 13
439 51.82 humidity 50.0 90 > th dose independent rect. 18 11
440 51.82 radiation 10.0 90 < th dose independent rect. 18 11
444 51.82 temperature 10.0 90 > th dose independent rect. 5 13
445 51.82 atmosphere 1015.0 90 < th dose independent rect. 5 13
460 51.84 atmosphere 1015.0 90 < th dose dependent rect. 16 1
463 51.85 wind 9.0 90 < th dose independent rect. 18 11
470 51.86 atmosphere 995.0 90 > th dose independent rect. 18 11
472 51.86 temperature 10.0 10 > th dose dependent rect. 16 2
482 51.87 radiation 40.0 90 < th dose dependent rect. 18 11
484 51.88 humidity 50.0 270 > th dose dependent rect. 9 3
510 51.92 precipitation 0.1 90 < th dose independent rect. 5 13
513 51.92 precipitation 0.1 90 < th dose dependent rect. 5 13
539 51.97 atmosphere 1015.0 10 < th dose dependent rect. 10 14
583 52.05 humidity 50.0 90 > th dose independent rect. 10 13
593 52.07 humidity 50.0 30 > th dose independent rect. 10 15
611 52.09 atmosphere 1015.0 90 < th dose dependent rect. 10 13
630 52.13 precipitation 0.1 90 < th dose independent rect. 18 11
637 52.13 precipitation 0.1 90 < th dose dependent rect. 18 11
640 52.14 radiation 20.0 720 < th dose independent rect. 17 12
642 52.14 radiation 1.0 90 > th dose dependent sin 13 NA
656 52.18 temperature 10.0 720 > th dose independent rect. 5 12
657 52.18 temperature 10.0 720 > th dose independent rect. 17 12
658 52.18 atmosphere 1015.0 720 < th dose independent rect. 5 12
661 52.18 radiation 1.0 30 > th dose independent rect. 14 20
673 52.19 humidity 50.0 10 > th dose dependent rect. 10 4
676 52.21 radiation 10.0 90 > th dose independent sin 13 NA
698 52.26 humidity 50.0 720 > th dose independent rect. 7 7
705 52.27 wind 9.0 720 < th dose independent rect. 5 12
711 52.27 radiation 40.0 720 < th dose dependent rect. 17 12
737 52.33 precipitation 0.1 720 < th dose independent rect. 5 12
741 52.33 precipitation 0.1 720 < th dose dependent rect. 5 12
758 52.35 atmosphere 995.0 1440 > th dose independent rect. 17 1
769 52.37 wind 9.0 720 < th dose independent rect. 17 12
770 52.37 atmosphere 995.0 90 > th dose independent rect. 5 13
811 52.40 temperature 10.0 1440 > th dose independent rect. 15 4
815 52.40 temperature 10.0 1440 > th dose independent rect. 19 20
845 52.43 precipitation 0.1 270 < th dose independent rect. 13 2
846 52.43 precipitation 0.1 270 < th dose dependent rect. 13 2
849 52.45 radiation 10.0 90 < th dose independent sin 13 NA
850 52.45 atmosphere 1010.0 270 < th dose independent rect. 9 2
855 52.46 humidity 50.0 720 > th dose independent rect. 17 12
861 52.47 atmosphere 1010.0 10 < th dose independent rect. 10 4
863 52.47 radiation 1.0 30 < th dose independent rect. 18 20
865 52.47 temperature 15.0 270 > th dose independent rect. 15 22
900 52.51 humidity 50.0 10 > th dose independent rect. 14 4
901 52.51 atmosphere 1010.0 270 < th dose independent rect. 8 4
924 52.54 temperature 30.0 720 < th dose independent rect. 5 4
931 52.55 humidity 90.0 30 < th dose dependent rect. 16 1
948 52.57 radiation 1.0 270 > th dose dependent rect. 13 19
951 52.58 wind 7.0 270 < th dose independent rect. 13 2
968 52.61 humidity 50.0 30 > th dose independent rect. 10 19
969 52.61 atmosphere 1015.0 10 < th dose dependent rect. 10 4
976 52.62 humidity 50.0 720 > th dose independent rect. 24 14
982 52.62 temperature 10.0 30 > th dose dependent rect. 18 11