BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0462800 Os09g0462800|Os09g0462800
         (133 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os09g0462800                                                      277   2e-75
Os03g0299700  Conserved hypothetical protein                       92   8e-20
Os07g0162450  Conserved hypothetical protein                       84   4e-17

>Os09g0462800 
          Length = 133

 Score =  277 bits (708), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 133/133 (100%), Positives = 133/133 (100%)

Query: 1   MAAVMVSGGGAERFEGLLMNQWMETSFGAAAGYKQCEAILGLLQRQMFYCTHLNFPVMLA 60
           MAAVMVSGGGAERFEGLLMNQWMETSFGAAAGYKQCEAILGLLQRQMFYCTHLNFPVMLA
Sbjct: 1   MAAVMVSGGGAERFEGLLMNQWMETSFGAAAGYKQCEAILGLLQRQMFYCTHLNFPVMLA 60

Query: 61  TCSLKSYFLWFQNSSIHTGSTVRVEHFLLLRSNGRLRGIIVLSPMMPTPKSTAQQLTSNL 120
           TCSLKSYFLWFQNSSIHTGSTVRVEHFLLLRSNGRLRGIIVLSPMMPTPKSTAQQLTSNL
Sbjct: 61  TCSLKSYFLWFQNSSIHTGSTVRVEHFLLLRSNGRLRGIIVLSPMMPTPKSTAQQLTSNL 120

Query: 121 CHFCGKAFRSVKR 133
           CHFCGKAFRSVKR
Sbjct: 121 CHFCGKAFRSVKR 133



>Os03g0299700 Conserved hypothetical protein
          Length = 99

 Score = 92.4 bits (228), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 46/74 (62%), Positives = 56/74 (75%)

Query: 58  MLATCSLKSYFLWFQNSSIHTGSTVRVEHFLLLRSNGRLRGIIVLSPMMPTPKSTAQQLT 117
           M  TCS +S FL  QN+SIHTGS +RVE  LLLRSN RL G  +LSP++PTPKSTAQ+ T
Sbjct: 1   MWTTCSTESCFLLLQNNSIHTGSIIRVEQSLLLRSNERLHGTNLLSPVIPTPKSTAQKQT 60

Query: 118 SNLCHFCGKAFRSV 131
           S+LC F G + RS+
Sbjct: 61  SDLCRFRGDSCRSL 74



>Os07g0162450 Conserved hypothetical protein
          Length = 149

 Score = 83.6 bits (205), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 44/74 (59%), Positives = 53/74 (71%)

Query: 58  MLATCSLKSYFLWFQNSSIHTGSTVRVEHFLLLRSNGRLRGIIVLSPMMPTPKSTAQQLT 117
           M  TCS +S FL  QNSSIH GS +RVE  LLL SN RL G  +LSP++PTPKSTA+Q T
Sbjct: 1   MWTTCSPESCFLLLQNSSIHAGSIIRVEQSLLLISNERLYGTNLLSPVIPTPKSTARQQT 60

Query: 118 SNLCHFCGKAFRSV 131
           S+LC F G +  S+
Sbjct: 61  SDLCRFRGDSCSSL 74



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.327    0.135    0.424 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,548,623
Number of extensions: 158588
Number of successful extensions: 440
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 443
Number of HSP's successfully gapped: 3
Length of query: 133
Length of database: 17,035,801
Length adjustment: 90
Effective length of query: 43
Effective length of database: 12,336,541
Effective search space: 530471263
Effective search space used: 530471263
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 150 (62.4 bits)