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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0462800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description :


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.24 (0.0351) R2 : 0.00177
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0665 (0.0739) R2dN8 : 0.00229 R2N8 : 0.00177
σ : 0.661
deviance : 200.81
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
184.67 0.638 3.19 0.247 0.504 -0.782 -0.114 2.38 0.0116 11.5 25.8 23 -- --
186.33 0.636 3.22 0.00389 0.477 -0.588 0.0569 -- -0.0515 11.5 26 26 -- --
184.72 0.633 3.19 0.232 0.505 -0.783 -- 2.29 0.00863 11.6 25.85 23 -- --
186.35 0.636 3.22 0.00415 0.477 -0.584 -- -- -0.052 11.4 26 26 -- --
198.26 0.656 3.22 0.131 -- -0.437 -- 1.93 -0.0347 -- 26.3 26 -- --
191.21 0.648 3.23 -0.0748 0.396 -- -0.0921 -- -0.0758 9.78 -- -- -- --
191.24 0.648 3.23 -0.0781 0.397 -- -- -- -0.0759 9.82 -- -- -- --
193.29 0.648 3.24 0.025 -- -0.483 -- -- -0.0822 -- 27.35 890 -- --
186.35 0.636 3.22 -- 0.477 -0.583 -- -- -0.0523 11.4 26 26 -- --
200.63 0.662 3.24 -0.0822 -- -- -- -- -0.0756 -- -- -- -- --
191.41 0.647 3.23 -- 0.397 -- -- -- -0.0672 9.83 -- -- -- --
193.27 0.647 3.24 -- -- -0.498 -- -- -0.0852 -- 27.1 886 -- --
200.81 0.661 3.24 -- -- -- -- -- -0.0665 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 175.66 humidity 80.0 90 > th dose independent rect. 12 1
2 175.76 humidity 90.0 30 > th dose dependent rect. 11 3
12 176.00 humidity 80.0 90 > th dose dependent rect. 12 1
13 176.31 humidity 90.0 30 > th dose independent rect. 11 3
21 176.37 radiation 1.0 14400 < th dose dependent rect. 3 1
22 176.55 precipitation 0.1 90 > th dose dependent rect. 10 4
27 176.82 humidity 90.0 10 > th dose independent rect. 13 1
35 176.82 humidity 90.0 10 > th dose dependent rect. 13 1
68 177.28 precipitation 0.1 90 > th dose independent rect. 13 1
71 177.28 precipitation 0.1 90 > th dose dependent rect. 13 1
74 177.35 precipitation 0.1 30 > th dose independent rect. 7 7
108 178.29 temperature 25.0 90 > th dose dependent rect. 1 3
120 178.54 wind 9.0 1440 < th dose independent rect. 3 1
121 178.54 temperature 10.0 1440 > th dose independent rect. 3 1
124 178.54 temperature 30.0 1440 < th dose independent rect. 3 1
128 178.54 humidity 50.0 1440 > th dose independent rect. 3 1
137 178.54 atmosphere 995.0 1440 > th dose independent rect. 3 1
138 178.54 radiation 1.0 1440 < th dose independent rect. 3 1
158 178.54 temperature 10.0 1440 > th dose independent rect. 4 23
173 178.75 temperature 25.0 90 > th dose independent rect. 1 2
179 178.80 atmosphere 1005.0 30 > th dose dependent rect. 2 1
180 178.85 wind 3.0 30 < th dose dependent rect. 2 1
182 178.87 atmosphere 1005.0 30 > th dose independent rect. 2 1
188 178.92 wind 3.0 30 < th dose independent rect. 2 1
203 179.01 humidity 80.0 30 > th dose independent rect. 2 1
204 179.02 atmosphere 995.0 30 > th dose independent rect. 3 23
208 179.04 temperature 10.0 30 > th dose independent rect. 2 1
210 179.04 temperature 30.0 30 < th dose independent rect. 2 1
211 179.04 humidity 50.0 30 > th dose independent rect. 2 1
214 179.04 atmosphere 995.0 30 > th dose independent rect. 2 1
216 179.04 atmosphere 1010.0 30 < th dose independent rect. 2 1
218 179.04 radiation 1.0 30 < th dose independent rect. 2 1
223 179.04 precipitation 0.1 30 < th dose independent rect. 2 1
224 179.04 temperature 10.0 30 > th dose independent rect. 3 23
225 179.04 humidity 50.0 30 > th dose dependent rect. 2 1
228 179.04 radiation 1.0 30 < th dose dependent rect. 2 1
233 179.04 precipitation 0.1 30 < th dose dependent rect. 2 1
241 179.20 atmosphere 1015.0 30 < th dose dependent rect. 2 1
250 179.33 temperature 25.0 720 > th dose dependent rect. 1 2
251 179.34 temperature 30.0 30 < th dose dependent rect. 2 1
256 179.44 wind 1.0 30 > th dose independent rect. 2 1
263 179.52 precipitation 0.1 30 < th dose independent rect. 3 23
265 179.52 precipitation 0.1 30 < th dose dependent rect. 3 23
282 179.77 temperature 25.0 720 > th dose independent rect. 4 1
324 180.22 wind 9.0 30 < th dose independent rect. 3 23
329 180.45 temperature 25.0 720 > th dose independent rect. 2 1
345 180.96 humidity 80.0 270 > th dose independent rect. 8 3
351 181.10 humidity 80.0 270 > th dose independent rect. 8 6
352 181.11 temperature 25.0 720 > th dose dependent rect. 4 1
353 181.11 temperature 10.0 30 > th dose dependent rect. 3 23
378 181.62 humidity 70.0 270 > th dose dependent rect. 8 6
390 181.90 humidity 50.0 10 > th dose independent rect. 3 23
396 181.97 humidity 80.0 270 > th dose independent rect. 8 1
405 182.11 radiation 10.0 1440 > th dose independent rect. 17 1
426 182.18 temperature 10.0 270 > th dose dependent rect. 3 14
438 182.27 atmosphere 1000.0 10 < th dose independent rect. 7 1
446 182.27 atmosphere 1000.0 10 < th dose dependent rect. 7 1
456 182.30 humidity 70.0 270 > th dose independent rect. 10 1
466 182.34 temperature 10.0 30 > th dose dependent rect. 3 17
469 182.37 temperature 25.0 720 > th dose dependent rect. 6 2
488 182.54 humidity 70.0 1440 > th dose independent rect. 17 2
498 182.61 humidity 60.0 30 > th dose dependent rect. 11 16
506 182.67 wind 3.0 720 > th dose independent rect. 5 1
514 182.76 radiation 40.0 30 < th dose independent rect. 11 16
521 182.79 humidity 80.0 1440 < th dose dependent rect. 18 1
539 183.01 atmosphere 1000.0 30 > th dose independent rect. 3 8
544 183.06 atmosphere 1010.0 30 < th dose independent rect. 3 23
563 183.17 wind 7.0 30 < th dose dependent rect. 3 8
625 183.27 radiation 40.0 30 < th dose dependent rect. 11 16
627 183.28 humidity 70.0 1440 > th dose independent rect. 17 14
629 183.30 humidity 70.0 1440 > th dose independent rect. 17 11
635 183.32 humidity 70.0 1440 > th dose independent rect. 17 5
659 183.41 temperature 25.0 30 > th dose dependent rect. 12 23
663 183.47 radiation 10.0 1440 < th dose independent rect. 17 1
664 183.47 atmosphere 1010.0 30 < th dose independent rect. 3 17
672 183.50 temperature 30.0 720 < th dose independent rect. 18 9
675 183.52 humidity 60.0 14400 < th dose independent rect. 17 1
686 183.57 wind 3.0 30 < th dose independent rect. 3 8
696 183.60 atmosphere 995.0 30 > th dose dependent rect. 3 8
697 183.61 radiation 40.0 30 < th dose independent rect. 11 3
699 183.62 temperature 30.0 10 < th dose independent rect. 11 3
710 183.67 temperature 10.0 720 > th dose dependent rect. 3 6
717 183.72 radiation 10.0 1440 < th dose independent rect. 17 11
718 183.74 humidity 80.0 720 < th dose independent rect. 8 1
730 183.79 radiation 10.0 1440 < th dose independent rect. 17 6
731 183.79 temperature 30.0 30 < th dose independent rect. 11 16
752 183.85 humidity 60.0 14400 > th dose independent rect. 17 1
757 183.85 temperature 15.0 10 > th dose dependent rect. 5 15
758 183.87 radiation 10.0 1440 < th dose independent rect. 17 3
767 183.89 wind 1.0 10 > th dose dependent rect. 11 1
776 183.92 atmosphere 995.0 14400 > th dose independent rect. 12 1
781 183.94 humidity 70.0 90 > th dose independent rect. 10 17
829 184.09 temperature 30.0 30 < th dose independent rect. 3 23
838 184.13 temperature 25.0 270 < th dose independent rect. 23 7
862 184.19 humidity 80.0 1440 < th dose independent rect. 19 1
865 184.19 temperature 25.0 30 > th dose dependent rect. 24 20
866 184.20 wind 3.0 10 > th dose independent rect. 9 3
884 184.25 temperature 30.0 10 < th dose independent rect. 20 18
893 184.26 wind 3.0 10 > th dose independent rect. 7 5
895 184.26 radiation 1.0 14400 < th dose dependent rect. 19 9
898 184.27 temperature 30.0 270 < th dose dependent rect. 7 5
912 184.29 temperature 10.0 30 > th dose independent rect. 3 8
914 184.29 humidity 50.0 30 > th dose independent rect. 3 8
916 184.29 atmosphere 1015.0 30 < th dose independent rect. 3 8
917 184.29 precipitation 0.1 30 < th dose independent rect. 3 8
918 184.29 temperature 10.0 30 > th dose independent rect. 11 16
920 184.29 precipitation 0.1 30 < th dose dependent rect. 3 8
921 184.29 temperature 25.0 30 > th dose dependent rect. 5 15
922 184.30 temperature 25.0 720 > th dose independent rect. 6 3
923 184.30 wind 9.0 30 < th dose independent rect. 3 8
938 184.32 wind 9.0 30 < th dose independent rect. 11 16
939 184.32 humidity 60.0 14400 < th dose independent rect. 17 16
941 184.32 temperature 10.0 30 > th dose dependent rect. 3 8
957 184.36 radiation 10.0 1440 > th dose dependent rect. 17 1
976 184.38 temperature 30.0 270 < th dose dependent rect. 9 1
979 184.40 wind 3.0 720 < th dose dependent rect. 2 1
983 184.41 atmosphere 1015.0 30 < th dose independent rect. 11 16