BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0455000 Os09g0455000|AK110047
         (262 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os09g0455000  Conserved hypothetical protein                      348   2e-96

>Os09g0455000 Conserved hypothetical protein
          Length = 262

 Score =  348 bits (894), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 199/262 (75%), Positives = 199/262 (75%)

Query: 1   MRAXXXXXXXXXXXXXXIAPAVEPEEAERLDPRLRRRHAAFQDPHHGGHARPQRRVLVKA 60
           MRA              IAPAVEPEEAERLDPRLRRRHAAFQDPHHGGHARPQRRVLVKA
Sbjct: 1   MRATTGHGGQRTRHRQGIAPAVEPEEAERLDPRLRRRHAAFQDPHHGGHARPQRRVLVKA 60

Query: 61  AERDADGACRFGLVDAPLQPRVDEVQVSPLLMELQCQHREVLVXXXXXXXXXXXXXXXPS 120
           AERDADGACRFGLVDAPLQPRVDEVQVSPLLMELQCQHREVLV               PS
Sbjct: 61  AERDADGACRFGLVDAPLQPRVDEVQVSPLLMELQCQHREVLVAAAARATRRRRHRAAPS 120

Query: 121 GRQVRVLAAAGSXXXXXXXXXXXXXXXXXXXXYQLEQHHAEXXXXXXXXXXXXXXPLGRE 180
           GRQVRVLAAAGS                    YQLEQHHAE              PLGRE
Sbjct: 121 GRQVRVLAAAGSDGDVVGRRRRLLLAAVLPPVYQLEQHHAEAVDVGAVGDGRVADPLGRE 180

Query: 181 VPARAAHGGEQRRLLPRHQLGEAEVRDLHLAAVGEQDVLRLDVAVHDLLLAPGVQVRQPA 240
           VPARAAHGGEQRRLLPRHQLGEAEVRDLHLAAVGEQDVLRLDVAVHDLLLAPGVQVRQPA
Sbjct: 181 VPARAAHGGEQRRLLPRHQLGEAEVRDLHLAAVGEQDVLRLDVAVHDLLLAPGVQVRQPA 240

Query: 241 RRADRHLHALPPLQHRPRAAEQ 262
           RRADRHLHALPPLQHRPRAAEQ
Sbjct: 241 RRADRHLHALPPLQHRPRAAEQ 262



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.322    0.137    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,813,412
Number of extensions: 307467
Number of successful extensions: 824
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 823
Number of HSP's successfully gapped: 1
Length of query: 262
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 163
Effective length of database: 11,866,615
Effective search space: 1934258245
Effective search space used: 1934258245
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 155 (64.3 bits)