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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0455000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.18 (0.0409) R2 : 0.32
β1 : 1.99 (0.18) R2dD : 0.528 R2D : 0.074
β2 : -- (--) R2dC : -- R2C : --
β3 : -2.01 (0.181) R2dE : 0.1 R2E : -0.47
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.907 (0.101) R2dN8 : 0.352 R2N8 : 0.0023
σ : 0.683
deviance : 213.06
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : -9.042
memory length : 10854
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
193.9 0.654 4.03 3.27 0.473 -1.56 0.203 3.76 1.2 2.47 10.03 4340 -- --
203.24 0.664 4.12 2.78 0.488 -1.87 0.471 -- 1.22 2.59 4.049 10984 -- --
194.01 0.649 4.03 3.27 0.486 -1.56 -- 3.82 1.2 2.35 9.689 4255 -- --
203.37 0.664 4.11 2.76 0.476 -1.89 -- -- 1.23 2.11 -9.042 10854 -- --
203.6 0.668 4.13 2.45 -- -2.07 -- 3.34 1.03 -- 10.4 4610 -- --
261.38 0.758 4.24 1.61 0.405 -- 0.29 -- 0.631 2.57 -- -- -- --
261.64 0.757 4.25 1.61 0.404 -- -- -- 0.629 2.33 -- -- -- --
213.06 0.683 4.18 1.99 -- -2.01 -- -- 0.907 -- -9.042 10854 -- --
311.35 0.826 4.25 -- 0.0661 -1.31 -- -- 0.606 3.01 -14.99 1733 -- --
271.32 0.77 4.24 1.62 -- -- -- -- 0.639 -- -- -- -- --
329.69 0.849 4.29 -- 0.435 -- -- -- 0.45 2.4 -- -- -- --
311.52 0.825 4.25 -- -- -1.38 -- -- 0.616 -- -14.99 1733 -- --
340.88 0.862 4.28 -- -- -- -- -- 0.459 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 176.59 wind 9 43200 > th dose dependent rect. 19 2
2 178.09 humidity 90 14400 < th dose independent rect. 21 1
4 178.47 humidity 90 14400 > th dose independent rect. 21 2
6 179.13 humidity 80 43200 > th dose independent rect. 6 1
7 179.49 humidity 90 14400 > th dose independent rect. 19 5
11 179.73 humidity 90 14400 > th dose dependent rect. 19 7
13 179.84 humidity 90 14400 < th dose independent rect. 18 6
26 180.65 humidity 80 14400 > th dose independent rect. 17 1
29 180.72 wind 9 43200 > th dose independent rect. 19 2
30 180.72 humidity 80 14400 > th dose dependent rect. 18 1
33 180.95 radiation 1 14400 < th dose independent rect. 18 12
35 181.03 humidity 80 43200 < th dose independent rect. 6 1
38 181.17 wind 9 43200 < th dose independent rect. 19 2
39 181.17 humidity 80 14400 < th dose independent rect. 16 2
51 181.95 wind 9 43200 > th dose dependent rect. 19 4
63 182.43 radiation 1 14400 > th dose independent rect. 17 13
65 182.46 humidity 80 43200 < th dose independent rect. 3 5
71 182.86 humidity 80 14400 < th dose independent rect. 12 7
90 183.31 humidity 80 14400 > th dose independent rect. 10 9
100 183.68 humidity 80 14400 > th dose independent rect. 12 7
113 184.05 humidity 60 43200 > th dose independent rect. 9 1
117 184.15 radiation 1 14400 > th dose independent rect. 17 2
127 184.18 radiation 1 14400 < th dose independent rect. 17 9
128 184.19 radiation 1 14400 < th dose independent rect. 17 6
131 184.20 radiation 1 14400 < th dose independent rect. 17 4
162 184.72 humidity 80 14400 > th dose independent rect. 10 1
164 184.75 humidity 80 43200 < th dose independent rect. 22 10
165 184.76 wind 9 43200 > th dose dependent rect. 19 9
185 185.23 humidity 90 14400 > th dose independent sin 15 NA
187 185.28 humidity 80 43200 < th dose independent rect. 23 1
197 185.45 wind 9 43200 > th dose dependent rect. 19 6
202 185.51 radiation 1 14400 < th dose independent rect. 5 1
203 185.51 humidity 90 14400 > th dose dependent sin 15 NA
205 185.55 humidity 60 43200 < th dose independent rect. 9 1
210 185.64 radiation 1 14400 > th dose independent rect. 5 1
212 185.66 humidity 80 43200 > th dose independent rect. 22 10
221 185.89 wind 9 43200 < th dose dependent rect. 3 15
232 186.03 wind 7 43200 < th dose dependent rect. 4 12
245 186.21 wind 1 43200 > th dose dependent rect. 3 15
267 186.45 wind 1 43200 > th dose dependent rect. 4 12
272 186.49 humidity 90 14400 > th dose independent rect. 18 16
341 186.96 wind 7 43200 < th dose dependent sin 2 NA
371 187.06 wind 9 43200 > th dose independent rect. 19 9
373 187.07 wind 3 43200 > th dose dependent rect. 6 1
393 187.21 humidity 90 14400 < th dose independent sin 16 NA
397 187.25 radiation 1 4320 < th dose independent rect. 17 17
398 187.25 wind 1 43200 > th dose dependent sin 2 NA
409 187.28 humidity 80 43200 < th dose dependent rect. 22 1
467 187.57 wind 9 43200 > th dose independent rect. 19 6
480 187.60 wind 3 43200 > th dose independent rect. 3 13
495 187.65 radiation 1 14400 < th dose dependent rect. 7 1
524 187.78 humidity 80 43200 > th dose independent rect. 3 1
533 187.80 humidity 80 14400 < th dose independent rect. 10 5
534 187.80 humidity 90 14400 < th dose independent rect. 17 17
562 187.92 radiation 1 4320 > th dose independent rect. 17 17
606 188.10 humidity 90 14400 > th dose dependent rect. 18 16
622 188.17 wind 9 43200 < th dose independent rect. 18 10
625 188.18 humidity 80 14400 > th dose independent rect. 10 5
636 188.24 humidity 80 43200 < th dose independent rect. 3 1
639 188.25 wind 9 43200 < th dose independent rect. 18 12
671 188.40 wind 3 43200 < th dose independent rect. 3 13
677 188.43 humidity 80 43200 < th dose dependent rect. 22 10
711 188.57 humidity 80 43200 < th dose independent rect. 22 6
734 188.65 radiation 1 14400 < th dose dependent rect. 5 1
745 188.69 wind 9 43200 > th dose dependent rect. 17 8
795 188.85 wind 9 43200 < th dose dependent rect. 20 23
801 188.89 humidity 80 43200 > th dose independent rect. 23 5
802 188.89 humidity 90 14400 < th dose independent rect. 7 19
879 189.07 wind 1 43200 > th dose dependent rect. 20 23
889 189.11 wind 3 43200 > th dose dependent rect. 11 21
892 189.13 humidity 80 14400 < th dose independent rect. 13 1
896 189.13 wind 9 43200 < th dose dependent rect. 17 23
900 189.14 humidity 90 14400 > th dose independent rect. 9 17
920 189.20 radiation 20 4320 < th dose independent rect. 2 6
927 189.20 wind 9 43200 < th dose dependent rect. 10 23
938 189.23 humidity 80 14400 > th dose dependent rect. 9 14
946 189.24 wind 9 43200 < th dose dependent rect. 14 23
972 189.30 wind 9 43200 < th dose dependent no NA NA