BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0453500 Os09g0453500|AK103120
         (467 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os09g0453500  Spectrin repeat containing protein                  696   0.0  

>Os09g0453500 Spectrin repeat containing protein
          Length = 467

 Score =  696 bits (1797), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/467 (76%), Positives = 355/467 (76%)

Query: 1   MAFSFASPAPQNPFQTPAQAPSLSPSPFQFNLXXXXXXXXXXXXXXXXXXXXXXXXXXLM 60
           MAFSFASPAPQNPFQTPAQAPSLSPSPFQFNL                          LM
Sbjct: 1   MAFSFASPAPQNPFQTPAQAPSLSPSPFQFNLQQPQQQQQQPPPQQQAAPAAQPQQQQLM 60

Query: 61  LYTTDGKPAGYNTKWEELHAESQKALLQIEDKIREYRDESERLDQCSRLHDSSISTVNFE 120
           LYTTDGKPAGYNTKWEELHAESQKALLQIEDKIREYRDESERLDQCSRLHDSSISTVNFE
Sbjct: 61  LYTTDGKPAGYNTKWEELHAESQKALLQIEDKIREYRDESERLDQCSRLHDSSISTVNFE 120

Query: 121 NDASEIAQELGGTTTMMEREKASVQELMTVVNEMMRNTEFAIRSYMMLRPRFIRXXXXXX 180
           NDASEIAQELGGTTTMMEREKASVQELMTVVNEMMRNTEFAIRSYMMLRPRFIR      
Sbjct: 121 NDASEIAQELGGTTTMMEREKASVQELMTVVNEMMRNTEFAIRSYMMLRPRFIRPGAGAN 180

Query: 181 XXXXXXXXXXXXQSNQPVALAPTIDFYSGIPKRPSHFMQQTINRFEKYLGECCKWIAELE 240
                       QSNQPVALAPTIDFYSGIPKRPSHFMQQTINRFEKYLGECCKWIAELE
Sbjct: 181 GGGSNPSGPAGAQSNQPVALAPTIDFYSGIPKRPSHFMQQTINRFEKYLGECCKWIAELE 240

Query: 241 QLVQMENNKRQSASLESLPKVMSNVHDYFIYVASKVENLHQYVESLKTEYLHEQRRLGNA 300
           QLVQMENNKRQSASLESLPKVMSNVHDYFIYVASKVENLHQYVESLKTEYLHEQRRLGNA
Sbjct: 241 QLVQMENNKRQSASLESLPKVMSNVHDYFIYVASKVENLHQYVESLKTEYLHEQRRLGNA 300

Query: 301 NDPFLXXXXXXXXXXXXXXXXVHPTLHLPAPVQPTTQIAGTVTSQPQQSLIXXXXXXXXX 360
           NDPFL                VHPTLHLPAPVQPTTQIAGTVTSQPQQSLI         
Sbjct: 301 NDPFLEANRREAAKQEAAARRVHPTLHLPAPVQPTTQIAGTVTSQPQQSLIPSGATSSSA 360

Query: 361 XXXXXXXXXXXXXXXXXXXXXXXXXXXNLFGTSGSAQLSTPFGTVSTPTLGSTPAPSGFG 420
                                      NLFGTSGSAQLSTPFGTVSTPTLGSTPAPSGFG
Sbjct: 361 FPSFSTPASAPSSSSLFSTPTTPTLSSNLFGTSGSAQLSTPFGTVSTPTLGSTPAPSGFG 420

Query: 421 NTTPSFASTPALGGTSLFSTPXXXXXXXXXXXXXXXXKVRSKPRGRR 467
           NTTPSFASTPALGGTSLFSTP                KVRSKPRGRR
Sbjct: 421 NTTPSFASTPALGGTSLFSTPFGGGATASGSSFGGTSKVRSKPRGRR 467



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.315    0.129    0.371 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,172,321
Number of extensions: 418850
Number of successful extensions: 1966
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1960
Number of HSP's successfully gapped: 1
Length of query: 467
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 363
Effective length of database: 11,605,545
Effective search space: 4212812835
Effective search space used: 4212812835
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 158 (65.5 bits)