BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0446800 Os09g0446800|AK065164
(707 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os09g0446800 Similar to Formate--tetrahydrofolate ligase (E... 1287 0.0
AK110334 845 0.0
AK121260 803 0.0
AK119828 234 2e-61
>Os09g0446800 Similar to Formate--tetrahydrofolate ligase (EC 6.3.4.3)
(Formyltetrahydrofolate synthetase)
(10-formyletrahydrofolate synthetase) (FHS) (FTHFS)
Length = 707
Score = 1287 bits (3330), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 639/707 (90%), Positives = 639/707 (90%)
Query: 1 MDVSVPPTNYPKSLSSIIKCHRRRAAINNCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
MDVSVPPTNYPKSLSSIIKCHRRRAAINNC
Sbjct: 1 MDVSVPPTNYPKSLSSIIKCHRRRAAINNCHSVVSHPPLSHSNHHHRSLRVRSSAAVAPP 60
Query: 61 XXXXXXXXMTTPKPSPTIRRLDVASPVPADIDIANAVSPLPIADIAAELGLRPEHFDLYG 120
MTTPKPSPTIRRLDVASPVPADIDIANAVSPLPIADIAAELGLRPEHFDLYG
Sbjct: 61 LPPPLVVPMTTPKPSPTIRRLDVASPVPADIDIANAVSPLPIADIAAELGLRPEHFDLYG 120
Query: 121 KYKAKVLLSVLDELKGQQDXXXXXXXXITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCL 180
KYKAKVLLSVLDELKGQQD ITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCL
Sbjct: 121 KYKAKVLLSVLDELKGQQDGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCL 180
Query: 181 RQPSQGPTFGIKXXXXXXXYSQVIPMDEFNLHLTGDIHXXXXXXXXXXXXXXXRIFHEAS 240
RQPSQGPTFGIK YSQVIPMDEFNLHLTGDIH RIFHEAS
Sbjct: 181 RQPSQGPTFGIKGGAAGGGYSQVIPMDEFNLHLTGDIHAITAANNLLAAAIDTRIFHEAS 240
Query: 241 QSDKALFNRLCPPNKEGKRRFADVMLRRLIKLGISKTDPNELTPDEVRRFARLDIDPESI 300
QSDKALFNRLCPPNKEGKRRFADVMLRRLIKLGISKTDPNELTPDEVRRFARLDIDPESI
Sbjct: 241 QSDKALFNRLCPPNKEGKRRFADVMLRRLIKLGISKTDPNELTPDEVRRFARLDIDPESI 300
Query: 301 TWRRVMDVNDRFLRKITIGQGPDEKGMVRETGFDIAVASEIMAVLALTTSLADMRERLGR 360
TWRRVMDVNDRFLRKITIGQGPDEKGMVRETGFDIAVASEIMAVLALTTSLADMRERLGR
Sbjct: 301 TWRRVMDVNDRFLRKITIGQGPDEKGMVRETGFDIAVASEIMAVLALTTSLADMRERLGR 360
Query: 361 MVIGNSKAGEPITADDLGVGGALTVLMKDAIHPTLMQTLEGTPVLVHAGPFANIAHGNSS 420
MVIGNSKAGEPITADDLGVGGALTVLMKDAIHPTLMQTLEGTPVLVHAGPFANIAHGNSS
Sbjct: 361 MVIGNSKAGEPITADDLGVGGALTVLMKDAIHPTLMQTLEGTPVLVHAGPFANIAHGNSS 420
Query: 421 IVADKIALKLVGKGGYVVTEAGFGSDIGTEKFMDIKCRYSGLMPQCAIIVATIRALKMHG 480
IVADKIALKLVGKGGYVVTEAGFGSDIGTEKFMDIKCRYSGLMPQCAIIVATIRALKMHG
Sbjct: 421 IVADKIALKLVGKGGYVVTEAGFGSDIGTEKFMDIKCRYSGLMPQCAIIVATIRALKMHG 480
Query: 481 GGPDVVAGKPLDHAYVSENVALVEAGCVNLAKHIANTKSYGVNVVVAINKFASDTEAEMD 540
GGPDVVAGKPLDHAYVSENVALVEAGCVNLAKHIANTKSYGVNVVVAINKFASDTEAEMD
Sbjct: 481 GGPDVVAGKPLDHAYVSENVALVEAGCVNLAKHIANTKSYGVNVVVAINKFASDTEAEMD 540
Query: 541 VVRNASLAAGAFDAVVCTHHAHGGKGAVDLGLAVQRACESQADPLKFLYPLESGIKEKIE 600
VVRNASLAAGAFDAVVCTHHAHGGKGAVDLGLAVQRACESQADPLKFLYPLESGIKEKIE
Sbjct: 541 VVRNASLAAGAFDAVVCTHHAHGGKGAVDLGLAVQRACESQADPLKFLYPLESGIKEKIE 600
Query: 601 SIAKFYGASGVEYSEQAEKQIEMYTKQGFSNLPICMAKTQYSFSHVPSMKGAPSGFVLPI 660
SIAKFYGASGVEYSEQAEKQIEMYTKQGFSNLPICMAKTQYSFSHVPSMKGAPSGFVLPI
Sbjct: 601 SIAKFYGASGVEYSEQAEKQIEMYTKQGFSNLPICMAKTQYSFSHVPSMKGAPSGFVLPI 660
Query: 661 RDVRASIGAGFIYPLVGTMSTMPGLPTRPCFYEIDVDTATGKVMGLS 707
RDVRASIGAGFIYPLVGTMSTMPGLPTRPCFYEIDVDTATGKVMGLS
Sbjct: 661 RDVRASIGAGFIYPLVGTMSTMPGLPTRPCFYEIDVDTATGKVMGLS 707
>AK110334
Length = 638
Score = 845 bits (2183), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 421/640 (65%), Positives = 496/640 (77%), Gaps = 8/640 (1%)
Query: 70 TTPKPSPTIRRLDVASPVPADIDIANAVSPLPIADIAA-ELGLRPEHFDLYGKYKAKVLL 128
TT KP L V PVP+DI+IA ++ P I+ IA LGL PE ++LYG KAKV L
Sbjct: 5 TTVKP-----LLPVKQPVPSDIEIAQSIKPRHISQIAELGLGLLPEEYELYGPTKAKVKL 59
Query: 129 SVLDELKGQQDXXXXXXXXITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPT 188
SV D LK + I+PTPLGEGKSTTTVGLCQALGA+L KKV+T +RQPSQG T
Sbjct: 60 SVRDRLKDAPNGKYVVVGGISPTPLGEGKSTTTVGLCQALGAYLKKKVLTNIRQPSQGTT 119
Query: 189 FGIKXXXXXXXYSQVIPMDEFNLHLTGDIHXXXXXXXXXXXXXXXRIFHEASQSDKALFN 248
FGIK YSQVIPM+E NLHLTGDIH R+FHEA+Q D+ALF
Sbjct: 120 FGIKGGAAGGGYSQVIPMEELNLHLTGDIHAISASNNLLAVAIDARMFHEAAQKDEALFR 179
Query: 249 RLCPPNKEGKRRFADVMLRRLIKLGISKTDPNELTPDEVRRFARLDIDPESITWRRVMDV 308
RLCP +K+GKR FA VML RL +LGI KT+P++ TP+EV RF RLDIDPE + WRRV+D+
Sbjct: 180 RLCPTDKQGKRHFAPVMLGRLQRLGIDKTNPDDPTPEEVSRFVRLDIDPEQVMWRRVVDI 239
Query: 309 NDRFLRKITIGQGPDEKGMVRETGFDIAVASEIMAVLALTTSLADMRERLGRMVIGNSKA 368
NDRFLR IT+GQGP+E+G R+TGFDI+VASEIMAVLAL T LADMR RLGRMV+ ++
Sbjct: 240 NDRFLRGITVGQGPEERGQERKTGFDISVASEIMAVLALATDLADMRSRLGRMVVAQARQ 299
Query: 369 GEPITADDLGVGGALTVLMKDAIHPTLMQTLEGTPVLVHAGPFANIAHGNSSIVADKIAL 428
G+P+TADDLGVGGALTV++KDAI PT+MQTLE TPVLVHAGPFANIAHGNSS++AD+I L
Sbjct: 300 GQPVTADDLGVGGALTVMLKDAIEPTIMQTLEATPVLVHAGPFANIAHGNSSVIADQIGL 359
Query: 429 KLVGKGGYVVTEAGFGSDIGTEKFMDIKCRYSGLMPQCAIIVATIRALKMHGGGPDVVAG 488
KLVG GYV+TEAGFG+DIG EKFM+IKCR SGL P A+IVAT+RALKMHGGGP VVAG
Sbjct: 360 KLVGPDGYVITEAGFGADIGLEKFMNIKCRASGLAPDAAVIVATVRALKMHGGGPPVVAG 419
Query: 489 KPLDHAYVSENVALVEAGCVNLAKHIANTKSYGVNVVVAINKFASDTEAEMDVVRNASLA 548
PL HAY++ +V LV+AGC NL +HI NT+ YGV VVVAIN FASD++ E++ VR A+L
Sbjct: 420 TPLAHAYLAPDVDLVKAGCSNLVRHIQNTRKYGVPVVVAINAFASDSQEELEAVRAAALD 479
Query: 549 AGAFDAVVCTHHAHGGKGAVDLGLAVQRACESQADPLKFLYPLESGIKEKIESIA-KFYG 607
AGAFDAVV THHA GG GAV+L AV +AC SQ +FLY ++ IK KIE+IA YG
Sbjct: 480 AGAFDAVVTTHHALGGAGAVELAQAVIKAC-SQPAEFQFLYDVDLPIKGKIEAIACGTYG 538
Query: 608 ASGVEYSEQAEKQIEMYTKQGFSNLPICMAKTQYSFSHVPSMKGAPSGFVLPIRDVRASI 667
A+ V YS +AE IE +T GF LPICMAKTQYSFSH ++KGAPSGF LPIRDVRAS
Sbjct: 539 AASVSYSPEAEAAIEKFTAMGFDKLPICMAKTQYSFSHDATLKGAPSGFTLPIRDVRASA 598
Query: 668 GAGFIYPLVGTMSTMPGLPTRPCFYEIDVDTATGKVMGLS 707
GAGF+YPLVG M TMPGLPTRPCFY+ID+D ATG+++GLS
Sbjct: 599 GAGFLYPLVGNMMTMPGLPTRPCFYDIDIDLATGRIVGLS 638
>AK121260
Length = 968
Score = 803 bits (2073), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 396/637 (62%), Positives = 475/637 (74%), Gaps = 3/637 (0%)
Query: 71 TPKPSPTIRRLDVASPVPADIDIANAVSPLPIADIAAELGLRPEHFDLYGKYKAKVLLSV 130
T S T L + +PVP+D++IA P I +A E+ + +LYG KAKV L+V
Sbjct: 333 TQWKSMTYLPLTLETPVPSDLNIAKKQIPKDIKQLAKEIHIHNSELELYGTKKAKVKLNV 392
Query: 131 LDELKGQQDXXXXXXXXITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFG 190
L+ L+ + ITPTPLGEGKSTTT+GLCQALGA L+K V+ CLRQPSQGPTFG
Sbjct: 393 LERLRNAPNGKYVVVSGITPTPLGEGKSTTTIGLCQALGAHLNKNVIGCLRQPSQGPTFG 452
Query: 191 IKXXXXXXXYSQVIPMDEFNLHLTGDIHXXXXXXXXXXXXXXXRIFHEASQSDKALFNRL 250
IK YSQVIPM+EFNLHLTGDIH R+FHE +Q+D+ LFNRL
Sbjct: 453 IKGGAAGGGYSQVIPMEEFNLHLTGDIHAITAANNLLAAQIDARMFHENTQTDQQLFNRL 512
Query: 251 CPPNKEGKRRFADVMLRRLIKLGISKTDPNELTPDEVRRFARLDIDPESITWRRVMDVND 310
P +GKR F+D+ +RL KL I KTDP+ T +E++ F RLDIDP +ITW+RV+D ND
Sbjct: 513 VP-TIDGKRTFSDIQRKRLDKLKIHKTDPSTFTEEEIKAFVRLDIDPTTITWQRVIDTND 571
Query: 311 RFLRKITIGQGPDEKGMVRETGFDIAVASEIMAVLALTTSLADMRERLGRMVIGNSKAGE 370
RFLRKITIGQ P EK RET FDI VASEIMAVLALTTSL D+RERLGRMV+ S+ G
Sbjct: 572 RFLRKITIGQSPTEKNFTRETNFDITVASEIMAVLALTTSLGDLRERLGRMVVAASRDGV 631
Query: 371 PITADDLGVGGALTVLMKDAIHPTLMQTLEGTPVLVHAGPFANIAHGNSSIVADKIALKL 430
PITADDLGVGGAL VLM+DAI PTLMQTLEGTPVLVHAGPFANIAHGNSSI+AD+I LKL
Sbjct: 632 PITADDLGVGGALAVLMRDAIKPTLMQTLEGTPVLVHAGPFANIAHGNSSILADQIGLKL 691
Query: 431 VGKGGYVVTEAGFGSDIGTEKFMDIKCRYSGLMPQCAIIVATIRALKMHGGGPDVVAGKP 490
VG GYVVTEAGFG DIG EKFMDIKCRYSGL+P C +IVAT+RALK+HGGGP V AG P
Sbjct: 692 VGPDGYVVTEAGFGFDIGCEKFMDIKCRYSGLVPNCVVIVATMRALKLHGGGPKVEAGSP 751
Query: 491 LDHAYVSENVALVEAGCVNLAKHIANTKSYGVNVVVAINKFASDTEAEMDVVRNASLAAG 550
+ Y EN+ L+E G NL K I N + +GV VV+AIN+F +DT+AE+D+V+ ++ G
Sbjct: 752 IPPEYAQENLPLLERGTQNLVKQIENARHFGVPVVIAINRFKTDTQAEIDLVKRIAIENG 811
Query: 551 AFDAVVCTHHAHGGKGAVDLGLAVQRACESQADPLKFLYPLESGIKEKIESIA-KFYGAS 609
AFDAV+ H A GG GA DL AV++AC + D KFLY L+ I+EKI IA K YGA
Sbjct: 812 AFDAVMADHWAKGGSGATDLARAVEQACLQKPD-FKFLYDLQLPIEEKIRIIARKIYGAD 870
Query: 610 GVEYSEQAEKQIEMYTKQGFSNLPICMAKTQYSFSHVPSMKGAPSGFVLPIRDVRASIGA 669
++ SE AEK+I+++TKQGF++LPICMAKT S SH PS+KG P GF+LPIRD+RASIGA
Sbjct: 871 DIKLSEMAEKRIQLFTKQGFNDLPICMAKTHLSLSHDPSLKGCPKGFILPIRDIRASIGA 930
Query: 670 GFIYPLVGTMSTMPGLPTRPCFYEIDVDTATGKVMGL 706
GF+YPLVG MST+PGLPTRPCFY+ID+D T ++ GL
Sbjct: 931 GFLYPLVGEMSTIPGLPTRPCFYDIDIDPITEEIYGL 967
>AK119828
Length = 699
Score = 234 bits (597), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 119/212 (56%), Positives = 141/212 (66%), Gaps = 1/212 (0%)
Query: 87 VPADIDIANAVSPLPIADIAAELGLRPEHFDLYGKYKAKVLLSVLDELKGQQDXXXXXXX 146
VP+DI++A + +P PI +A E+GL + YG KAKV LSVL L + +
Sbjct: 401 VPSDIEVARSQTPKPITQVAREIGLISSELEPYGSVKAKVDLSVLKRLAHRNNGKYIVVA 460
Query: 147 XITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKXXXXXXXYSQVIPM 206
ITPTPLGEGKSTTT+GL QALGA L K C+RQPSQGPTFGIK YSQVIPM
Sbjct: 461 GITPTPLGEGKSTTTIGLAQALGAHLGKPAFACVRQPSQGPTFGIKGGAAGGGYSQVIPM 520
Query: 207 DEFNLHLTGDIHXXXXXXXXXXXXXXXRIFHEASQSDKALFNRLCPPNKEGKRRFADVML 266
+EFNLHLTGD H R+FHEA+Q D ALF+RLC P K+G R FA +M
Sbjct: 521 EEFNLHLTGDNHAVQAANNLLAAAIDTRMFHEATQKDAALFDRLC-PKKKGVRTFAPIMF 579
Query: 267 RRLIKLGISKTDPNELTPDEVRRFARLDIDPE 298
RRL KLGI+KT+P++LT DE RFARLDIDP
Sbjct: 580 RRLKKLGINKTNPDDLTDDEKARFARLDIDPR 611
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.136 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 21,996,050
Number of extensions: 896446
Number of successful extensions: 2004
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 1996
Number of HSP's successfully gapped: 4
Length of query: 707
Length of database: 17,035,801
Length adjustment: 108
Effective length of query: 599
Effective length of database: 11,396,689
Effective search space: 6826616711
Effective search space used: 6826616711
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 160 (66.2 bits)