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Os09g0446800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Formate--tetrahydrofolate ligase (EC 6.3.4.3) (Formyltetrahydrofolate synthetase) (10-formyletrahydrofolate synthetase) (FHS) (FTHFS).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 14.1 (0.0221) R2 : 0.847
β1 : -- (--) R2dD : -- R2D : --
β2 : 2.88 (0.0571) R2dC : 0.853 R2C : 0.847
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0215 (0.0464) R2dN8 : 9.32e-05 R2N8 : -0.00547
σ : 0.416
deviance : 78.91
__
_____
C
peak time of C : 19.3
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
69.03 0.39 14 -0.0119 2.87 -0.284 -0.9 -2.04 0.0393 19.2 25.71 1152 -- --
72.82 0.397 14.1 -0.732 2.87 -0.363 -0.825 -- -0.165 19.2 258 47520 -- --
70.78 0.392 14 -0.0113 2.87 -0.318 -- -2.24 0.0367 19.2 23.5 1339 -- --
74.63 0.402 14.1 -0.712 2.87 -0.36 -- -- -0.165 19.3 258.1 47520 -- --
395.66 0.926 14.1 -0.754 -- -2.72 -- -1.45 -0.395 -- 66.73 506 -- --
74.13 0.404 14.1 -0.353 2.87 -- -0.819 -- -0.014 19.3 -- -- -- --
75.92 0.408 14.1 -0.336 2.87 -- -- -- -0.0159 19.3 -- -- -- --
397.17 0.928 14.1 -0.999 -- -2.76 -- -- -0.461 -- 96.35 502 -- --
78.08 0.412 14 -- 2.87 0.146 -- -- 0.0653 19.3 260.5 47520 -- --
513.35 1.06 14 -0.387 -- -- -- -- -0.0647 -- -- -- -- --
78.91 0.416 14.1 -- 2.88 -- -- -- 0.0215 19.3 -- -- -- --
421.36 0.956 14.1 -- -- -2.41 -- -- -0.308 -- 101.4 493 -- --
517.29 1.06 14 -- -- -- -- -- -0.0218 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 64.30 atmosphere 995.0 90 > th dose dependent rect. 4 18
3 64.99 temperature 10.0 270 > th dose dependent rect. 21 14
4 65.01 atmosphere 1000.0 90 > th dose independent rect. 4 18
11 65.28 temperature 25.0 270 < th dose independent rect. 2 19
14 65.35 temperature 25.0 270 < th dose independent rect. 2 9
16 65.43 temperature 15.0 270 > th dose dependent rect. 22 3
18 65.49 temperature 15.0 90 > th dose dependent rect. 22 6
24 65.54 temperature 30.0 270 < th dose dependent rect. 1 20
29 65.62 temperature 15.0 270 > th dose dependent rect. 23 1
66 66.11 temperature 10.0 270 > th dose dependent rect. 20 17
108 66.47 radiation 40.0 90 < th dose independent rect. 4 19
124 66.59 radiation 10.0 1440 < th dose dependent rect. 23 6
127 66.60 radiation 40.0 270 < th dose dependent rect. 2 9
128 66.60 temperature 30.0 270 < th dose dependent rect. 1 10
132 66.66 temperature 15.0 270 > th dose independent rect. 9 17
149 66.77 temperature 25.0 270 < th dose independent sin 5 NA
156 66.81 temperature 20.0 90 > th dose independent rect. 22 6
159 66.82 atmosphere 1000.0 90 > th dose independent rect. 9 13
167 66.87 radiation 20.0 270 < th dose independent rect. 2 8
178 66.97 radiation 40.0 270 < th dose independent rect. 1 10
191 67.02 temperature 20.0 270 > th dose independent rect. 22 3
209 67.10 radiation 40.0 270 < th dose independent rect. 1 21
231 67.21 atmosphere 1000.0 270 > th dose independent rect. 11 10
232 67.21 atmosphere 1000.0 10 > th dose independent rect. 10 13
234 67.22 wind 1.0 14400 < th dose independent rect. 9 3
250 67.27 wind 1.0 14400 > th dose independent rect. 9 3
255 67.29 wind 3.0 14400 < th dose dependent rect. 11 1
259 67.29 radiation 1.0 30 < th dose dependent rect. 22 21
260 67.30 temperature 15.0 270 > th dose independent rect. 24 23
266 67.32 atmosphere 995.0 90 > th dose dependent rect. 9 13
279 67.36 atmosphere 995.0 720 > th dose dependent rect. 10 1
280 67.37 temperature 15.0 270 > th dose independent rect. 10 15
291 67.39 atmosphere 1015.0 30 < th dose dependent rect. 9 20
297 67.41 atmosphere 995.0 10 > th dose dependent rect. 10 12
305 67.44 temperature 15.0 90 > th dose independent rect. 19 11
309 67.45 wind 1.0 90 > th dose independent rect. 21 23
317 67.47 atmosphere 1000.0 30 > th dose independent rect. 21 23
341 67.54 atmosphere 1000.0 90 > th dose independent rect. 7 15
343 67.54 temperature 30.0 270 < th dose dependent sin 5 NA
346 67.55 temperature 20.0 270 > th dose independent rect. 23 1
359 67.58 temperature 10.0 270 > th dose dependent sin 8 NA
387 67.67 atmosphere 995.0 720 > th dose dependent rect. 9 4
389 67.67 atmosphere 995.0 90 > th dose dependent rect. 7 15
392 67.68 wind 5.0 270 < th dose independent rect. 22 3
393 67.68 radiation 1.0 1440 < th dose independent rect. 24 5
396 67.68 temperature 10.0 270 > th dose dependent rect. 9 17
400 67.69 wind 1.0 90 > th dose dependent rect. 20 1
420 67.75 humidity 50.0 10 > th dose independent rect. 22 22
439 67.79 wind 3.0 90 > th dose independent rect. 20 1
446 67.81 wind 1.0 90 > th dose independent rect. 22 21
454 67.82 wind 5.0 90 < th dose independent rect. 22 6
460 67.83 temperature 15.0 1440 > th dose independent rect. 16 8
474 67.86 wind 1.0 14400 > th dose independent rect. 11 1
497 67.89 temperature 15.0 270 > th dose independent rect. 1 21
508 67.94 atmosphere 1000.0 720 > th dose independent rect. 10 3
518 67.95 humidity 80.0 270 > th dose independent rect. 22 3
520 67.95 radiation 1.0 30 < th dose independent rect. 22 22
524 67.96 temperature 15.0 720 > th dose independent rect. 18 3
531 67.97 temperature 15.0 1440 > th dose independent rect. 6 18
538 67.99 humidity 50.0 43200 > th dose independent rect. 24 4
561 68.02 humidity 80.0 90 > th dose independent rect. 22 6
578 68.04 radiation 40.0 10 < th dose independent rect. 5 18
583 68.05 temperature 20.0 90 > th dose independent rect. 20 1
588 68.06 atmosphere 1015.0 90 < th dose dependent rect. 6 13
594 68.07 atmosphere 1015.0 10 < th dose dependent rect. 6 14
597 68.08 temperature 15.0 10 > th dose independent rect. 20 10
603 68.09 temperature 15.0 1440 > th dose independent rect. 21 1
608 68.10 atmosphere 1000.0 90 > th dose independent rect. 20 1
610 68.10 temperature 15.0 270 > th dose independent rect. 17 13
617 68.11 wind 1.0 14400 < th dose independent rect. 11 1
641 68.16 temperature 25.0 270 > th dose independent rect. 21 16
658 68.18 atmosphere 1000.0 10 > th dose dependent rect. 20 2
671 68.19 temperature 15.0 270 > th dose independent rect. 6 22
678 68.20 precipitation 0.1 270 < th dose independent rect. 22 3
680 68.20 atmosphere 995.0 90 > th dose dependent rect. 20 1
681 68.20 precipitation 0.1 270 < th dose dependent rect. 22 3
689 68.21 radiation 40.0 90 < th dose independent rect. 4 7
698 68.22 atmosphere 1000.0 720 > th dose independent rect. 10 1
701 68.22 atmosphere 1010.0 10 < th dose independent rect. 20 10
702 68.22 temperature 15.0 270 > th dose independent rect. 21 16
714 68.23 wind 9.0 270 < th dose dependent rect. 22 3
722 68.25 temperature 15.0 720 > th dose independent rect. 10 11
735 68.26 atmosphere 1010.0 30 < th dose independent rect. 9 20
740 68.27 temperature 30.0 270 < th dose independent rect. 22 3
741 68.27 humidity 50.0 270 > th dose independent rect. 22 3
744 68.27 atmosphere 995.0 270 > th dose independent rect. 22 3
745 68.27 radiation 1.0 270 < th dose independent rect. 22 3
753 68.27 temperature 15.0 10 > th dose independent rect. 21 23
754 68.27 radiation 1.0 270 < th dose dependent rect. 22 3
775 68.30 temperature 30.0 90 < th dose independent rect. 22 6
776 68.30 humidity 50.0 90 > th dose independent rect. 22 6
779 68.30 atmosphere 995.0 90 > th dose independent rect. 22 6
780 68.30 radiation 1.0 90 < th dose independent rect. 22 6
786 68.30 temperature 10.0 90 > th dose independent rect. 4 18
787 68.30 atmosphere 1015.0 90 < th dose independent rect. 4 18
793 68.30 radiation 1.0 90 < th dose dependent rect. 22 6
803 68.31 atmosphere 1000.0 270 > th dose independent rect. 13 8
813 68.32 temperature 10.0 90 > th dose independent rect. 20 1
815 68.32 temperature 30.0 90 < th dose independent rect. 20 1
816 68.32 humidity 50.0 90 > th dose independent rect. 20 1
820 68.32 atmosphere 1010.0 90 < th dose independent rect. 20 1
822 68.32 radiation 1.0 90 < th dose independent rect. 20 1
831 68.32 temperature 10.0 90 > th dose independent rect. 21 23
832 68.32 radiation 1.0 90 < th dose dependent rect. 20 1
843 68.33 wind 9.0 90 < th dose independent rect. 20 1
844 68.33 humidity 70.0 43200 > th dose dependent rect. 21 1
849 68.34 precipitation 0.1 90 < th dose independent rect. 22 6
856 68.34 precipitation 0.1 90 < th dose dependent rect. 22 6
857 68.34 temperature 15.0 10 > th dose dependent rect. 20 9
865 68.35 precipitation 0.1 90 < th dose independent rect. 21 23
871 68.35 precipitation 0.1 90 < th dose dependent rect. 21 23
873 68.36 wind 9.0 270 < th dose independent rect. 1 21
892 68.39 atmosphere 1015.0 270 < th dose independent rect. 22 3
902 68.40 atmosphere 1000.0 90 > th dose independent rect. 15 8
907 68.41 wind 9.0 90 < th dose independent rect. 4 18
922 68.43 precipitation 0.1 90 < th dose independent rect. 20 1
928 68.43 humidity 90.0 90 < th dose dependent rect. 20 1
929 68.43 precipitation 0.1 90 < th dose dependent rect. 20 1
938 68.44 radiation 40.0 270 < th dose dependent rect. 2 19
940 68.45 temperature 15.0 1440 > th dose independent rect. 20 4
963 68.48 atmosphere 1000.0 10 > th dose independent rect. 20 2
965 68.48 atmosphere 1015.0 90 < th dose independent rect. 22 6
968 68.48 temperature 15.0 1440 > th dose independent rect. 11 13
989 68.50 wind 9.0 1440 < th dose independent rect. 24 5
993 68.50 temperature 15.0 270 > th dose independent rect. 21 14
999 68.50 wind 9.0 90 < th dose dependent rect. 22 6