BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0436800 Os09g0436800|AK058729
         (299 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os09g0436800  Abortive infection protein family protein           550   e-157

>Os09g0436800 Abortive infection protein family protein
          Length = 299

 Score =  550 bits (1418), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 282/299 (94%), Positives = 282/299 (94%)

Query: 1   MSLTDRLISFLRISERPLFQRIMGFSFMVFVLWSPVVIPLLPTLVQSWTISSSTGIVGYA 60
           MSLTDRLISFLRISERPLFQRIMGFSFMVFVLWSPVVIPLLPTLVQSWTISSSTGIVGYA
Sbjct: 1   MSLTDRLISFLRISERPLFQRIMGFSFMVFVLWSPVVIPLLPTLVQSWTISSSTGIVGYA 60

Query: 61  CIVGLYVSIMILVILWGKRIRGYENPVEQYGMNLASVSRVQEFLQGLAGGITVVGLVHSV 120
           CIVGLYVSIMILVILWGKRIRGYENPVEQYGMNLASVSRVQEFLQGLAGGITVVGLVHSV
Sbjct: 61  CIVGLYVSIMILVILWGKRIRGYENPVEQYGMNLASVSRVQEFLQGLAGGITVVGLVHSV 120

Query: 121 SILLGFAALRAGSYSFVTRPLDLLKSSSNVLLLALRGFVTATSIAVVEEVVFRSWLPEEV 180
           SILLGFAALRAGSYSFVTRPLDLLKSSSNVLLLALRGFVTATSIAVVEEVVFRSWLPEEV
Sbjct: 121 SILLGFAALRAGSYSFVTRPLDLLKSSSNVLLLALRGFVTATSIAVVEEVVFRSWLPEEV 180

Query: 181 AVDLGYYSAILISGVAFSLIHRSXXXXXXXXXXXXXXXXXKQRTQGKLAAPIGLRSGIMT 240
           AVDLGYYSAILISGVAFSLIHRS                 KQRTQGKLAAPIGLRSGIMT
Sbjct: 181 AVDLGYYSAILISGVAFSLIHRSLPSVPGFLLLSLVLFGLKQRTQGKLAAPIGLRSGIMT 240

Query: 241 ASYLIQTSGIIQSKPGTPFWMISTYHLHPFDGVIGLSVCALLAILFFPQEPVQKDSFVS 299
           ASYLIQTSGIIQSKPGTPFWMISTYHLHPFDGVIGLSVCALLAILFFPQEPVQKDSFVS
Sbjct: 241 ASYLIQTSGIIQSKPGTPFWMISTYHLHPFDGVIGLSVCALLAILFFPQEPVQKDSFVS 299



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.326    0.140    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,569,218
Number of extensions: 309702
Number of successful extensions: 936
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 935
Number of HSP's successfully gapped: 1
Length of query: 299
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 199
Effective length of database: 11,814,401
Effective search space: 2351065799
Effective search space used: 2351065799
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 156 (64.7 bits)