BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0421600 Os09g0421600|Os09g0421600
(396 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os09g0421600 Zinc finger, U1-type domain containing protein 671 0.0
Os09g0421700 Zinc finger, C2H2-type domain containing protein 237 1e-62
>Os09g0421600 Zinc finger, U1-type domain containing protein
Length = 396
Score = 671 bits (1731), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 334/396 (84%), Positives = 334/396 (84%)
Query: 1 MNNNNGFVQAVAGDPLAVVRDALLSQLQHDRLRQEIIVAELAKIERAMALRDAXXXXXXX 60
MNNNNGFVQAVAGDPLAVVRDALLSQLQHDRLRQEIIVAELAKIERAMALRDA
Sbjct: 1 MNNNNGFVQAVAGDPLAVVRDALLSQLQHDRLRQEIIVAELAKIERAMALRDASPSPSPS 60
Query: 61 XGTPLERLRQVSILLRKLAPCKADTCLLGQYFANFLFSCKTWSCAVCEVQTSSERNLRDH 120
GTPLERLRQVSILLRKLAPCKADTCLLGQYFANFLFSCKTWSCAVCEVQTSSERNLRDH
Sbjct: 61 PGTPLERLRQVSILLRKLAPCKADTCLLGQYFANFLFSCKTWSCAVCEVQTSSERNLRDH 120
Query: 121 YGGQKHQSKVAGLELXXXXXXXXXXXXPSPVAGQRAHAARWSCSVCQVHCNGEWHFDTHL 180
YGGQKHQSKVAGLEL PSPVAGQRAHAARWSCSVCQVHCNGEWHFDTHL
Sbjct: 121 YGGQKHQSKVAGLELKAKTATVKTTAKPSPVAGQRAHAARWSCSVCQVHCNGEWHFDTHL 180
Query: 181 KGKRHQANTQALLEQSNKNSGNSESHDGTKAQPSNVSHHAXXXXXXXXXXXXXXATWICR 240
KGKRHQANTQALLEQSNKNSGNSESHDGTKAQPSNVSHHA ATWICR
Sbjct: 181 KGKRHQANTQALLEQSNKNSGNSESHDGTKAQPSNVSHHAEKKKRKKKKEEEEEATWICR 240
Query: 241 ACQAVCTCESDLQNHLRGRRHQLKVQALPEAAKQEXXXXXXXXXXXXXXXSEWVCSLCQA 300
ACQAVCTCESDLQNHLRGRRHQLKVQALPEAAKQE SEWVCSLCQA
Sbjct: 241 ACQAVCTCESDLQNHLRGRRHQLKVQALPEAAKQEKNNPPKLAKNPNKQPSEWVCSLCQA 300
Query: 301 KCNTESQLEHHRRSTRHQQKVESLGWNAKESDLGTLQGMXXXXXXXXXXXXXATMDKQKA 360
KCNTESQLEHHRRSTRHQQKVESLGWNAKESDLGTLQGM ATMDKQKA
Sbjct: 301 KCNTESQLEHHRRSTRHQQKVESLGWNAKESDLGTLQGMSSDGSSSKSVKISATMDKQKA 360
Query: 361 TYFCEVCSLKCTSQRMLADHLSGKKHIKQLELQLFS 396
TYFCEVCSLKCTSQRMLADHLSGKKHIKQLELQLFS
Sbjct: 361 TYFCEVCSLKCTSQRMLADHLSGKKHIKQLELQLFS 396
>Os09g0421700 Zinc finger, C2H2-type domain containing protein
Length = 328
Score = 237 bits (604), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 154/390 (39%), Positives = 192/390 (49%), Gaps = 93/390 (23%)
Query: 13 GDPLAVVRDALLSQLQHDRLRQEIIVAELAKIERAMALRDAXXXXXXXXGTPLER----- 67
GD L VVRDALLSQLQ DRLR++IIVAELAKIERAMALRD +P R
Sbjct: 10 GDSLVVVRDALLSQLQQDRLRKDIIVAELAKIERAMALRDVSQ-------SPTPRHAAAA 62
Query: 68 ------LRQVSILLRKLAPCKADTCLLGQYFANFLFSCKTWSCAVCEVQTSSERNLRDHY 121
+ V+ +K +P + + + WSCAVC+V+T+SERNLRDH
Sbjct: 63 AAAGKTITTVATPAKKPSPSEKSEPAVQKSMPP-----SAWSCAVCQVRTTSERNLRDHC 117
Query: 122 GGQKHQSKVAGLELXXXXXXXXXXXXPSPVAGQRAHAARWSCSVCQVHCNGEWHFDTHLK 181
GGQKHQSKVA LE PSP A AARW CS+C + CNGE FDTHLK
Sbjct: 118 GGQKHQSKVAALE-KTTKAMARTTAKPSPGA-----AARWGCSICNISCNGECDFDTHLK 171
Query: 182 GKRHQANTQALLEQSNKNSGNSESHDGTKAQPSNVSHHAXXXXXXXXXXXXXXATWICRA 241
GK+HQANTQALLEQ+ K+S N ES GTKA AT ICR
Sbjct: 172 GKKHQANTQALLEQNKKSSVNPESQ-GTKA---------------------AAATLICRV 209
Query: 242 CQAVCTCESDLQNHLRGRRHQLKVQALPEAAKQEXXXXXXXXXXXXXXXSEWVCSLCQAK 301
CQA TC+SDLQ+HL+ +HQL ++ A + C +C K
Sbjct: 210 CQAKFTCQSDLQSHLKVMKHQLNLR-----APSSDGSSFTSATSESLSLELYSCKVCSVK 264
Query: 302 CNTESQLEHHRRSTRHQQKVESLGWNAKESDLGTLQGMXXXXXXXXXXXXXATMDKQKAT 361
C E L +H +H + ++
Sbjct: 265 CTFERMLAYHLTGKKH-------------------------------------LKQENLQ 287
Query: 362 YFCEVCSLKCTSQRMLADHLSGKKHIKQLE 391
CE+C L+C S+++L+DH GKKH +LE
Sbjct: 288 LSCEICKLQCNSEKVLSDHRYGKKHQAKLE 317
Score = 102 bits (253), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 75/245 (30%), Positives = 102/245 (41%), Gaps = 43/245 (17%)
Query: 150 PVAGQRAHAARWSCSVCQVHCNGEWHFDTHLKGKRHQANTQALLEQSNKNSGNSESHDGT 209
P + + WSC+VCQV E + H G++HQ+ AL E++ K T
Sbjct: 87 PAVQKSMPPSAWSCAVCQVRTTSERNLRDHCGGQKHQSKVAAL-EKTTKAMAR------T 139
Query: 210 KAQPSNVSHHAXXXXXXXXXXXXXXATWICRACQAVCTCESDLQNHLRGRRHQLKVQALP 269
A+PS A W C C C E D HL+G++HQ QAL
Sbjct: 140 TAKPS----------------PGAAARWGCSICNISCNGECDFDTHLKGKKHQANTQALL 183
Query: 270 EAAKQEXXXXXXXXXXXXXXXSEWVCSLCQAKCNTESQLEHHRRSTRHQQKVESLGWNAK 329
E K+ + +C +CQAK +S L+ H + +HQ L A
Sbjct: 184 EQNKKSSVNPESQGTKAAA--ATLICRVCQAKFTCQSDLQSHLKVMKHQ-----LNLRAP 236
Query: 330 ESDLGTLQGMXXXXXXXXXXXXXATMDKQKATYFCEVCSLKCTSQRMLADHLSGKKHIKQ 389
SD + Y C+VCS+KCT +RMLA HL+GKKH+KQ
Sbjct: 237 SSDGSSFTSATSESLSLEL-------------YSCKVCSVKCTFERMLAYHLTGKKHLKQ 283
Query: 390 LELQL 394
LQL
Sbjct: 284 ENLQL 288
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.128 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,293,913
Number of extensions: 362335
Number of successful extensions: 941
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 906
Number of HSP's successfully gapped: 4
Length of query: 396
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 293
Effective length of database: 11,657,759
Effective search space: 3415723387
Effective search space used: 3415723387
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 157 (65.1 bits)