Os09g0421600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, U1-type domain containing protein.
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Os09g0421600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, U1-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 130.61 | 0.537 | 3.45 | -0.918 | 0.208 | 0.86 | -0.178 | -1.88 | -0.169 | 11.2 | 20.33 | 1293 | -- | -- |
| 132.73 | 0.537 | 3.39 | -0.427 | 0.266 | 1.06 | -0.0537 | -- | -0.032 | 11.1 | 11.98 | 1143 | -- | -- |
| 130.69 | 0.532 | 3.45 | -0.912 | 0.229 | 0.872 | -- | -1.85 | -0.166 | 11.2 | 20.44 | 1245 | -- | -- |
| 132.74 | 0.537 | 3.39 | -0.428 | 0.264 | 1.06 | -- | -- | -0.0301 | 11.2 | 11.97 | 1144 | -- | -- |
| 132.82 | 0.537 | 3.45 | -0.925 | -- | 0.801 | -- | -1.78 | -0.166 | -- | 20.64 | 1438 | -- | -- |
| 150.27 | 0.575 | 3.35 | -0.11 | 0.144 | -- | -0.152 | -- | 0.154 | 9.53 | -- | -- | -- | -- |
| 150.36 | 0.574 | 3.35 | -0.115 | 0.144 | -- | -- | -- | 0.154 | 9.68 | -- | -- | -- | -- |
| 134.98 | 0.541 | 3.39 | -0.432 | -- | 0.98 | -- | -- | -0.029 | -- | 14.67 | 1486 | -- | -- |
| 136.94 | 0.545 | 3.37 | -- | 0.248 | 0.878 | -- | -- | 0.043 | 11.1 | 12.14 | 1140 | -- | -- |
| 151.59 | 0.575 | 3.35 | -0.117 | -- | -- | -- | -- | 0.154 | -- | -- | -- | -- | -- |
| 150.71 | 0.574 | 3.34 | -- | 0.145 | -- | -- | -- | 0.167 | 9.74 | -- | -- | -- | -- |
| 139.16 | 0.549 | 3.37 | -- | -- | 0.715 | -- | -- | 0.046 | -- | 16.73 | 1444 | -- | -- |
| 151.95 | 0.575 | 3.35 | -- | -- | -- | -- | -- | 0.167 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 130.41 | temperature | 20 | 1440 | > th | dose dependent | rect. | 12 | 19 |
| 4 | 130.47 | temperature | 20 | 1440 | > th | dose dependent | rect. | 14 | 17 |
| 14 | 130.54 | temperature | 20 | 1440 | > th | dose dependent | rect. | 15 | 13 |
| 19 | 130.56 | humidity | 90 | 43200 | > th | dose independent | rect. | 22 | 1 |
| 20 | 130.56 | temperature | 20 | 1440 | > th | dose dependent | sin | 15 | NA |
| 31 | 130.63 | temperature | 10 | 720 | > th | dose dependent | rect. | 18 | 22 |
| 41 | 130.71 | humidity | 90 | 43200 | > th | dose dependent | rect. | 22 | 1 |
| 53 | 130.81 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 3 |
| 60 | 130.85 | temperature | 20 | 720 | > th | dose dependent | rect. | 19 | 21 |
| 66 | 130.88 | temperature | 10 | 720 | > th | dose dependent | rect. | 18 | 15 |
| 92 | 130.98 | humidity | 80 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 96 | 130.98 | temperature | 20 | 720 | > th | dose dependent | rect. | 18 | 16 |
| 126 | 131.09 | temperature | 25 | 4320 | > th | dose independent | rect. | 2 | 14 |
| 131 | 131.10 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 136 | 131.11 | temperature | 20 | 1440 | > th | dose dependent | rect. | 1 | 23 |
| 142 | 131.13 | humidity | 80 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 149 | 131.14 | temperature | 20 | 1440 | > th | dose dependent | rect. | 5 | 23 |
| 154 | 131.15 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 23 |
| 163 | 131.17 | temperature | 30 | 720 | < th | dose dependent | rect. | 16 | 19 |
| 173 | 131.19 | temperature | 25 | 4320 | > th | dose independent | rect. | 5 | 11 |
| 179 | 131.20 | temperature | 25 | 4320 | < th | dose independent | rect. | 5 | 11 |
| 195 | 131.22 | humidity | 90 | 43200 | > th | dose dependent | rect. | 18 | 6 |
| 205 | 131.23 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 21 |
| 223 | 131.26 | temperature | 25 | 4320 | < th | dose independent | rect. | 3 | 13 |
| 224 | 131.26 | temperature | 25 | 1440 | < th | dose independent | rect. | 6 | 15 |
| 304 | 131.39 | temperature | 25 | 1440 | < th | dose independent | rect. | 8 | 14 |
| 358 | 131.48 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 393 | 131.55 | temperature | 25 | 1440 | > th | dose independent | rect. | 9 | 13 |
| 414 | 131.57 | temperature | 25 | 1440 | < th | dose independent | rect. | 14 | 7 |
| 415 | 131.57 | temperature | 25 | 1440 | > th | dose independent | rect. | 6 | 16 |
| 420 | 131.58 | temperature | 25 | 1440 | < th | dose independent | rect. | 12 | 10 |
| 444 | 131.61 | humidity | 90 | 43200 | > th | dose independent | rect. | 18 | 6 |
| 452 | 131.62 | temperature | 25 | 4320 | > th | dose independent | sin | 3 | NA |
| 453 | 131.62 | temperature | 25 | 1440 | > th | dose independent | rect. | 12 | 10 |
| 461 | 131.64 | temperature | 25 | 4320 | < th | dose independent | sin | 2 | NA |
| 463 | 131.64 | temperature | 25 | 1440 | > th | dose independent | rect. | 14 | 7 |
| 506 | 131.70 | humidity | 90 | 43200 | > th | dose dependent | rect. | 9 | 17 |
| 512 | 131.71 | humidity | 90 | 43200 | > th | dose dependent | rect. | 11 | 14 |
| 618 | 131.83 | humidity | 90 | 43200 | > th | dose dependent | sin | 17 | NA |
| 691 | 131.91 | temperature | 25 | 1440 | < th | dose independent | sin | 22 | NA |
| 726 | 131.93 | humidity | 90 | 43200 | > th | dose dependent | rect. | 5 | 21 |
| 729 | 131.94 | humidity | 90 | 43200 | < th | dose independent | rect. | 22 | 1 |
| 746 | 131.95 | temperature | 20 | 1440 | > th | dose dependent | rect. | 12 | 1 |
| 792 | 131.99 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 2 |
| 842 | 132.03 | humidity | 90 | 43200 | < th | dose independent | rect. | 18 | 5 |
| 892 | 132.07 | humidity | 90 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 901 | 132.08 | temperature | 25 | 1440 | > th | dose independent | sin | 22 | NA |
| 933 | 132.10 | humidity | 90 | 43200 | > th | dose independent | rect. | 9 | 16 |
| 953 | 132.12 | radiation | 1 | 14400 | < th | dose dependent | rect. | 4 | 1 |
| 954 | 132.12 | temperature | 20 | 1440 | > th | dose dependent | rect. | 2 | 6 |
| 963 | 132.13 | radiation | 1 | 14400 | < th | dose dependent | rect. | 2 | 3 |
| 989 | 132.15 | humidity | 90 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 995 | 132.15 | humidity | 80 | 43200 | > th | dose dependent | rect. | 12 | 1 |