BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0415300 Os09g0415300|Os09g0415300
         (516 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os09g0415300  Conserved hypothetical protein                      753   0.0  

>Os09g0415300 Conserved hypothetical protein
          Length = 516

 Score =  753 bits (1945), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/418 (88%), Positives = 370/418 (88%)

Query: 99  ILGASPAPALXXXXXXXXXXXXXXXXLVKVLDMDRAKTLIKEQDWDAVEGYIWSILCDNQ 158
           ILGASPAPAL                LVKVLDMDRAKTLIKEQDWDAVEGYIWSILCDNQ
Sbjct: 99  ILGASPAPALPTSPETSIPAPPPPPSLVKVLDMDRAKTLIKEQDWDAVEGYIWSILCDNQ 158

Query: 159 EHCVDDFARLHPALYLMFREEKLFQLLAENKIDEAHIFYQHSIVSLEDRDGIFLPVDLGV 218
           EHCVDDFARLHPALYLMFREEKLFQLLAENKIDEAHIFYQHSIVSLEDRDGIFLPVDLGV
Sbjct: 159 EHCVDDFARLHPALYLMFREEKLFQLLAENKIDEAHIFYQHSIVSLEDRDGIFLPVDLGV 218

Query: 219 RIKNLDPSNSSSVPIRRSTQEELSRYVKLYFPKSIGREEYTTCEQFVEKHQLQNISSEKD 278
           RIKNLDPSNSSSVPIRRSTQEELSRYVKLYFPKSIGREEYTTCEQFVEKHQLQNISSEKD
Sbjct: 219 RIKNLDPSNSSSVPIRRSTQEELSRYVKLYFPKSIGREEYTTCEQFVEKHQLQNISSEKD 278

Query: 279 CMICLACGWEVLGMWKMRPHFVYAHHVKHCSGVTQDLLNRLKNIDGKPILDFTQLVGKFE 338
           CMICLACGWEVLGMWKMRPHFVYAHHVKHCSGVTQDLLNRLKNIDGKPILDFTQLVGKFE
Sbjct: 279 CMICLACGWEVLGMWKMRPHFVYAHHVKHCSGVTQDLLNRLKNIDGKPILDFTQLVGKFE 338

Query: 339 XXXXXXXXXXXXXXXKLKRKKTDMVACXXXXXXXXXXXXXXXXXFCDEFVLEKAKLIHGF 398
                          KLKRKKTDMVAC                 FCDEFVLEKAKLIHGF
Sbjct: 339 MTASSMSSKYSSATKKLKRKKTDMVACRSGSKRSRGKRSEEKSEFCDEFVLEKAKLIHGF 398

Query: 399 CVDLANLMKTYVPGEVHVCYKKILDIQLVASSLESNINQMKLKDVFGSSNEDLFGDDFDD 458
           CVDLANLMKTYVPGEVHVCYKKILDIQLVASSLESNINQMKLKDVFGSSNEDLFGDDFDD
Sbjct: 399 CVDLANLMKTYVPGEVHVCYKKILDIQLVASSLESNINQMKLKDVFGSSNEDLFGDDFDD 458

Query: 459 VMLKKLSELYKLCIDLGKFTKTSGVREDLAHFEEVLLRIESEVGCTLRVAGLKRAIWL 516
           VMLKKLSELYKLCIDLGKFTKTSGVREDLAHFEEVLLRIESEVGCTLRVAGLKRAIWL
Sbjct: 459 VMLKKLSELYKLCIDLGKFTKTSGVREDLAHFEEVLLRIESEVGCTLRVAGLKRAIWL 516



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.323    0.139    0.423 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,018,791
Number of extensions: 464336
Number of successful extensions: 1012
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1010
Number of HSP's successfully gapped: 1
Length of query: 516
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 411
Effective length of database: 11,553,331
Effective search space: 4748419041
Effective search space used: 4748419041
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 158 (65.5 bits)