BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0410700 Os09g0410700|011-019-E11
(251 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os09g0410700 Conserved hypothetical protein 246 9e-66
Os08g0432800 Similar to BHLH transcription activator Ivory ... 108 5e-24
>Os09g0410700 Conserved hypothetical protein
Length = 251
Score = 246 bits (629), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 143/251 (56%), Positives = 143/251 (56%)
Query: 1 MGLSTVYPSLTYXXXXXXXXXXXXQTDKASLLAEVIEHVKELKRQTTXXXXXXXXGDYHG 60
MGLSTVYPSLTY QTDKASLLAEVIEHVKELKRQTT GDYHG
Sbjct: 1 MGLSTVYPSLTYVCGCDIVCVCGVQTDKASLLAEVIEHVKELKRQTTAIAAAAAAGDYHG 60
Query: 61 NXXXXXXAVVGRRSAAAQQLLPTXXXXXXXXXXXXXXGKLVVRASLCCEDRPDLIPDIXX 120
N AVVGRRSAAAQQLLPT GKLVVRASLCCEDRPDLIPDI
Sbjct: 61 NDEDDDDAVVGRRSAAAQQLLPTEADELAVDAAVDAEGKLVVRASLCCEDRPDLIPDIAR 120
Query: 121 XXXXXXXXXXXXEITTLGGRVRSVLLITAXXXXXXXXXXXXXXXXGHRLLLRHGIXXXXX 180
EITTLGGRVRSVLLITA GHRLLLRHGI
Sbjct: 121 ALAALRLRARRAEITTLGGRVRSVLLITADEQQQQHCDDVDDDEDGHRLLLRHGIDGAGA 180
Query: 181 XXXXXXXXXXSHRRHECIATVQEALRGVMDRRXXXXXXXXXXXXXXXXXXXXXXXIKRQR 240
SHRRHECIATVQEALRGVMDRR IKRQR
Sbjct: 181 AADDDDECAASHRRHECIATVQEALRGVMDRRAAASSGDTSSSGGAVVAGGGGGSIKRQR 240
Query: 241 MNYGVHEQCSV 251
MNYGVHEQCSV
Sbjct: 241 MNYGVHEQCSV 251
>Os08g0432800 Similar to BHLH transcription activator Ivory seed
Length = 345
Score = 108 bits (269), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 78/188 (41%), Positives = 87/188 (46%), Gaps = 32/188 (17%)
Query: 25 QTDKASLLAEVIEHVKELKRQTTXXXXXXXXGDYHGNXXXXXXAVVGRRSAAAQQLLPTX 84
+TDKASLLAEVIEHVKELKRQT+ D VV LLPT
Sbjct: 152 KTDKASLLAEVIEHVKELKRQTSAMME-----DGAAGGEAAAAPVV---------LLPTE 197
Query: 85 XXXXXXXXXXXXXGKLVVRASLCCEDRPDLIPDIXXXXXXXXXXXXXXEITTLGGRVRSV 144
G+LV RASLCCEDR DLIP I EI TLGGRVRSV
Sbjct: 198 DDELEVDAAADEGGRLVARASLCCEDRADLIPGIARALAALRLRARRAEIATLGGRVRSV 257
Query: 145 LLITAXXXXXXXXXXXXXXXXGHRLLLRHGIXXXXXXXXXXXXXXXSHRRHECIATVQEA 204
LLI A G+ HG SHRRHE +A++ EA
Sbjct: 258 LLIAA-------VEEEDPDEAGNDDDGEHGY-----------GVAASHRRHELVASIHEA 299
Query: 205 LRGVMDRR 212
LRGVM+R+
Sbjct: 300 LRGVMNRK 307
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.323 0.136 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,015,915
Number of extensions: 76055
Number of successful extensions: 133
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 130
Number of HSP's successfully gapped: 2
Length of query: 251
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 153
Effective length of database: 11,918,829
Effective search space: 1823580837
Effective search space used: 1823580837
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 155 (64.3 bits)