BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0410300 Os09g0410300|AK064203
         (224 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os09g0410300  Conserved hypothetical protein                      303   7e-83

>Os09g0410300 Conserved hypothetical protein
          Length = 224

 Score =  303 bits (776), Expect = 7e-83,   Method: Compositional matrix adjust.
 Identities = 159/224 (70%), Positives = 159/224 (70%)

Query: 1   MSVDAPMTEAPEPVNVSNHNIEEQNSCHDREQNSCHDRESRMSASIGNVKLMDKHEVSKE 60
           MSVDAPMTEAPEPVNVSNHNIEEQNSCHDREQNSCHDRESRMSASIGNVKLMDKHEVSKE
Sbjct: 1   MSVDAPMTEAPEPVNVSNHNIEEQNSCHDREQNSCHDRESRMSASIGNVKLMDKHEVSKE 60

Query: 61  LQCTADSRLDALPKDHFSPVVNGQEVLDKPRSQLEVVSTSYDGNQAPDSMNGLETXXXXX 120
           LQCTADSRLDALPKDHFSPVVNGQEVLDKPRSQLEVVSTSYDGNQAPDSMNGLET     
Sbjct: 61  LQCTADSRLDALPKDHFSPVVNGQEVLDKPRSQLEVVSTSYDGNQAPDSMNGLETKEKKK 120

Query: 121 XXXXXXXXXXXXXXPEYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNTAKPSDSQG 180
                         PEY                                 NTAKPSDSQG
Sbjct: 121 DKKDKKRHRDKKDDPEYLEKKRLKKEKKRMEKEKGKKQKEGEGVSSSEQKNTAKPSDSQG 180

Query: 181 TSSARPPAPMRIPEPKISNVGTPVDXXXXXXXXXXXXXVKPLQR 224
           TSSARPPAPMRIPEPKISNVGTPVD             VKPLQR
Sbjct: 181 TSSARPPAPMRIPEPKISNVGTPVDTTRTLTTTKIRIKVKPLQR 224



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.306    0.124    0.353 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,666,551
Number of extensions: 192226
Number of successful extensions: 606
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 603
Number of HSP's successfully gapped: 1
Length of query: 224
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 127
Effective length of database: 11,971,043
Effective search space: 1520322461
Effective search space used: 1520322461
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 154 (63.9 bits)