BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0409000 Os09g0409000|AK107676
         (126 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os09g0409000  Conserved hypothetical protein                      112   5e-26

>Os09g0409000 Conserved hypothetical protein
          Length = 126

 Score =  112 bits (281), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 63/100 (63%), Positives = 63/100 (63%)

Query: 27  GQLXXXXXXXXSTRXXXXXXXXXXXATPTTLQQLETRXXXXXXXXXXXXXXXXXXTICPS 86
           GQL        STR           ATPTTLQQLETR                  TICPS
Sbjct: 27  GQLTTTAAAATSTRVDDHVVEDDDDATPTTLQQLETRLADDQDLADLLDGGDGAATICPS 86

Query: 87  NCQKCLVKCAGTCVADIVSPPTFVACFLKCAVVKLCFAKV 126
           NCQKCLVKCAGTCVADIVSPPTFVACFLKCAVVKLCFAKV
Sbjct: 87  NCQKCLVKCAGTCVADIVSPPTFVACFLKCAVVKLCFAKV 126



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.328    0.134    0.444 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,154,854
Number of extensions: 48438
Number of successful extensions: 245
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 244
Number of HSP's successfully gapped: 1
Length of query: 126
Length of database: 17,035,801
Length adjustment: 89
Effective length of query: 37
Effective length of database: 12,388,755
Effective search space: 458383935
Effective search space used: 458383935
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 149 (62.0 bits)