Os09g0409000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os09g0409000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 520.68 | 1.07 | 6.16 | -6.41 | 1.38 | -1.46 | 0.384 | -7.05 | -1.95 | 6.66 | 1004 | 5998 | -- | -- |
| 566.68 | 1.11 | 6.11 | -5.87 | 1.35 | -1.74 | 0.319 | -- | -1.9 | 6.67 | 1004 | 5689 | -- | -- |
| 520.58 | 1.06 | 6.16 | -6.43 | 1.38 | -1.44 | -- | -7.02 | -1.95 | 6.64 | 1004 | 6149 | -- | -- |
| 565.87 | 1.11 | 6.11 | -5.97 | 1.35 | -1.8 | -- | -- | -1.96 | 6.77 | 1004 | 5698 | -- | -- |
| 620.46 | 1.16 | 6.19 | -6.39 | -- | -1.52 | -- | -7.03 | -1.94 | -- | 1004 | 6146 | -- | -- |
| 625.87 | 1.17 | 6.06 | -6.16 | 1.41 | -- | 0.372 | -- | -1.74 | 6.69 | -- | -- | -- | -- |
| 626.22 | 1.17 | 6.06 | -6.15 | 1.42 | -- | -- | -- | -1.74 | 6.68 | -- | -- | -- | -- |
| 666.13 | 1.2 | 6.14 | -5.95 | -- | -1.97 | -- | -- | -1.97 | -- | 1004 | 6146 | -- | -- |
| 1435.19 | 1.76 | 5.91 | -- | 1.41 | -2.13 | -- | -- | -1.24 | 7.18 | 999.2 | 12793 | -- | -- |
| 730.75 | 1.26 | 6.09 | -6.12 | -- | -- | -- | -- | -1.71 | -- | -- | -- | -- | -- |
| 1622.84 | 1.88 | 5.9 | -- | 1.34 | -- | -- | -- | -1.05 | 6.96 | -- | -- | -- | -- |
| 1520.53 | 1.82 | 6.02 | -- | -- | -2.54 | -- | -- | -1.37 | -- | 999.5 | 11984 | -- | -- |
| 1717.56 | 1.93 | 5.93 | -- | -- | -- | -- | -- | -1.03 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 515.70 | temperature | 25 | 43200 | > th | dose dependent | rect. | 11 | 1 |
| 7 | 516.32 | temperature | 25 | 43200 | > th | dose dependent | rect. | 6 | 7 |
| 8 | 516.33 | temperature | 25 | 43200 | > th | dose dependent | rect. | 24 | 13 |
| 9 | 516.36 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 14 | 18 |
| 24 | 516.58 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 14 | 1 |
| 62 | 517.12 | wind | 3 | 43200 | < th | dose dependent | rect. | 14 | 2 |
| 70 | 517.34 | temperature | 25 | 43200 | > th | dose dependent | sin | 6 | NA |
| 75 | 517.39 | temperature | 25 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 76 | 517.42 | temperature | 30 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 126 | 518.12 | temperature | 30 | 43200 | < th | dose dependent | rect. | 7 | 1 |
| 131 | 518.17 | temperature | 10 | 43200 | > th | dose dependent | rect. | 7 | 1 |
| 133 | 518.19 | temperature | 25 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 135 | 518.20 | atmosphere | 1000 | 14400 | > th | dose dependent | rect. | 19 | 1 |
| 146 | 518.27 | temperature | 30 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 167 | 518.49 | atmosphere | 1000 | 14400 | > th | dose dependent | rect. | 16 | 5 |
| 211 | 518.80 | humidity | 80 | 43200 | > th | dose independent | rect. | 15 | 1 |
| 215 | 518.84 | atmosphere | 1000 | 14400 | > th | dose dependent | rect. | 16 | 1 |
| 231 | 518.91 | atmosphere | 1010 | 14400 | < th | dose independent | rect. | 19 | 1 |
| 239 | 518.96 | temperature | 25 | 43200 | < th | dose independent | rect. | 3 | 1 |
| 240 | 519.00 | atmosphere | 1005 | 43200 | > th | dose independent | sin | 14 | NA |
| 243 | 519.02 | temperature | 25 | 43200 | > th | dose independent | rect. | 3 | 1 |
| 276 | 519.20 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 14 | 1 |
| 283 | 519.24 | atmosphere | 1010 | 14400 | > th | dose independent | rect. | 19 | 2 |
| 318 | 519.45 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 3 | 16 |
| 333 | 519.51 | temperature | 25 | 43200 | > th | dose independent | rect. | 6 | 4 |
| 431 | 519.87 | temperature | 30 | 43200 | < th | dose independent | rect. | 7 | 6 |
| 435 | 519.88 | temperature | 30 | 43200 | < th | dose independent | rect. | 5 | 8 |
| 438 | 519.88 | temperature | 30 | 43200 | < th | dose independent | rect. | 19 | 18 |
| 439 | 519.88 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 3 | 21 |
| 442 | 519.89 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 17 | 7 |
| 445 | 519.89 | temperature | 30 | 43200 | < th | dose independent | rect. | 22 | 15 |
| 480 | 519.99 | humidity | 90 | 14400 | < th | dose independent | rect. | 23 | 8 |
| 494 | 520.02 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 14 | 4 |
| 499 | 520.03 | temperature | 25 | 43200 | < th | dose independent | rect. | 2 | 8 |
| 518 | 520.06 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 23 | 20 |
| 536 | 520.15 | temperature | 25 | 43200 | < th | dose independent | rect. | 6 | 4 |
| 545 | 520.17 | atmosphere | 1015 | 14400 | < th | dose dependent | rect. | 20 | 1 |
| 565 | 520.22 | temperature | 30 | 43200 | > th | dose independent | rect. | 8 | 5 |
| 581 | 520.23 | temperature | 30 | 43200 | < th | dose independent | sin | 6 | NA |
| 582 | 520.23 | temperature | 25 | 43200 | > th | dose independent | rect. | 3 | 7 |
| 685 | 520.43 | temperature | 30 | 43200 | > th | dose independent | sin | 6 | NA |
| 700 | 520.48 | temperature | 25 | 43200 | > th | dose independent | rect. | 24 | 10 |
| 870 | 520.79 | temperature | 10 | 43200 | > th | dose dependent | rect. | 12 | 2 |
| 877 | 520.79 | temperature | 25 | 43200 | > th | dose dependent | rect. | 6 | 22 |
| 907 | 520.83 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 16 | 1 |
| 913 | 520.83 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 14 | 17 |
| 919 | 520.84 | temperature | 25 | 43200 | > th | dose dependent | no | NA | NA |
| 929 | 520.85 | temperature | 25 | 43200 | > th | dose dependent | rect. | 24 | 1 |
| 947 | 520.87 | temperature | 10 | 43200 | > th | dose dependent | sin | 4 | NA |