BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0408500 Os09g0408500|Os09g0408500
(362 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os09g0408500 Heavy metal transport/detoxification protein d... 680 0.0
Os10g0404000 263 2e-70
Os09g0408300 228 5e-60
Os08g0431100 Bromo adjacent region domain containing protein 117 2e-26
>Os09g0408500 Heavy metal transport/detoxification protein domain containing
protein
Length = 362
Score = 680 bits (1754), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 328/341 (96%), Positives = 328/341 (96%)
Query: 1 MDSIKQNVRANLNMDYSVSLEIHLHTQEKELKSPNSVSSMIDVTSDEVAICNNDGENAKL 60
MDSIKQNVRANLNMDYSVSLEIHLHTQEKELKSPNSVSSMIDVTSDEVAICNNDGENAKL
Sbjct: 1 MDSIKQNVRANLNMDYSVSLEIHLHTQEKELKSPNSVSSMIDVTSDEVAICNNDGENAKL 60
Query: 61 ANISTTKXXXXXXXXXXXXXFKWLGPESHSKKREELQILLAKGIYIHVIRRRGDRIKVRY 120
ANISTTK FKWLGPESHSKKREELQILLAKGIYIHVIRRRGDRIKVRY
Sbjct: 61 ANISTTKDSSSSAAGNDSSGFKWLGPESHSKKREELQILLAKGIYIHVIRRRGDRIKVRY 120
Query: 121 QHLQDPETPRANLEEWLLVTRTANPDPLCIRLSGRTRIRPHNMSERENPSTIGVGTVIDG 180
QHLQDPETPRANLEEWLLVTRTANPDPLCIRLSGRTRIRPHNMSERENPSTIGVGTVIDG
Sbjct: 121 QHLQDPETPRANLEEWLLVTRTANPDPLCIRLSGRTRIRPHNMSERENPSTIGVGTVIDG 180
Query: 181 WLYDGWWEGILLKLVAMSTEFFPLSEFAGEKKMVLFHRDQLRHSLEWIDSKWKAFAHRED 240
WLYDGWWEGILLKLVAMSTEFFPLSEFAGEKKMVLFHRDQLRHSLEWIDSKWKAFAHRED
Sbjct: 181 WLYDGWWEGILLKLVAMSTEFFPLSEFAGEKKMVLFHRDQLRHSLEWIDSKWKAFAHRED 240
Query: 241 LRISHYCTRSSYKRRSNEANGRPSNKQRVKLYYMTLRMNIDCNGCYHKIRRALLQMQELE 300
LRISHYCTRSSYKRRSNEANGRPSNKQRVKLYYMTLRMNIDCNGCYHKIRRALLQMQELE
Sbjct: 241 LRISHYCTRSSYKRRSNEANGRPSNKQRVKLYYMTLRMNIDCNGCYHKIRRALLQMQELE 300
Query: 301 SHLIDRKHGRVSVFGAFSPQDVAIKIRKRTNRRVEILEVRE 341
SHLIDRKHGRVSVFGAFSPQDVAIKIRKRTNRRVEILEVRE
Sbjct: 301 SHLIDRKHGRVSVFGAFSPQDVAIKIRKRTNRRVEILEVRE 341
>Os10g0404000
Length = 965
Score = 263 bits (671), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 122/134 (91%), Positives = 127/134 (94%)
Query: 108 VIRRRGDRIKVRYQHLQDPETPRANLEEWLLVTRTANPDPLCIRLSGRTRIRPHNMSERE 167
VIRRRGDRIKVRYQHLQDPETPRANLEEWLLVTRTANPD L IRLSGRTRIRPHNMSERE
Sbjct: 524 VIRRRGDRIKVRYQHLQDPETPRANLEEWLLVTRTANPDMLRIRLSGRTRIRPHNMSERE 583
Query: 168 NPSTIGVGTVIDGWLYDGWWEGILLKLVAMSTEFFPLSEFAGEKKMVLFHRDQLRHSLEW 227
NPSTI VGTVIDGWLYDGWWEGI+LKLVAMS EFFPLSEFAGEKKMVLF RDQLRHSLEW
Sbjct: 584 NPSTISVGTVIDGWLYDGWWEGIVLKLVAMSMEFFPLSEFAGEKKMVLFRRDQLRHSLEW 643
Query: 228 IDSKWKAFAHREDL 241
I ++WK FAH+ED+
Sbjct: 644 IGNEWKNFAHQEDI 657
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/129 (40%), Positives = 70/129 (54%), Gaps = 13/129 (10%)
Query: 1 MDSIKQNVRANLNMDYSVSLEIHLHTQEKELKSPNSVSSMIDVTSDEVAICNNDGENAKL 60
MDSIKQ L SL I + NSVSS+ DVTS+EVAICNNDG++AKL
Sbjct: 194 MDSIKQC----LITTVESSLRIFAYLA---FADTNSVSSITDVTSNEVAICNNDGKDAKL 246
Query: 61 ANISTTKXXXXXXXXXXXXXFKWLGPESHSKKREELQILLAKGI------YIHVIRRRGD 114
ANIS TK FKWLGPESHSKK + + +G +++++ + G+
Sbjct: 247 ANISPTKDSSSSIAGNDSGDFKWLGPESHSKKGKSYKSFWRRGFTFMVHDFVYILVQHGN 306
Query: 115 RIKVRYQHL 123
++ + L
Sbjct: 307 KLVAYVEEL 315
>Os09g0408300
Length = 956
Score = 228 bits (581), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 109/134 (81%), Positives = 117/134 (87%), Gaps = 3/134 (2%)
Query: 108 VIRRRGDRIKVRYQHLQDPETPRANLEEWLLVTRTANPDPLCIRLSGRTRIRPHNMSERE 167
VIRR GDRIKVRYQHLQDPETPRANLEEWLLVTRTANPD L IRLSGRTRIRPHNMSERE
Sbjct: 478 VIRRCGDRIKVRYQHLQDPETPRANLEEWLLVTRTANPDTLRIRLSGRTRIRPHNMSERE 537
Query: 168 NPSTIGVGTVIDGWLYDGWWEGILLKLVAMSTEFFPLSEFAGEKKMVLFHRDQLRHSLEW 227
NPSTI VGTVIDGWLYDGWWEGI+LK+ + L+ GEKKMVLF +DQLRHSLEW
Sbjct: 538 NPSTISVGTVIDGWLYDGWWEGIVLKV---NDARRLLAYLPGEKKMVLFRKDQLRHSLEW 594
Query: 228 IDSKWKAFAHREDL 241
ID++WK FAHRED+
Sbjct: 595 IDNEWKNFAHREDI 608
Score = 68.6 bits (166), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 53/88 (60%), Gaps = 6/88 (6%)
Query: 42 DVTSDEVAICNNDGENAKLANISTTKXXXXXXXXXXXXXFKWLGPESHSKKREELQILLA 101
DV SDEVAICNNDG++AKLANISTTK FKWLGPESHSKK + +
Sbjct: 182 DVASDEVAICNNDGKDAKLANISTTKGSSSSTAGNDSGDFKWLGPESHSKKGKSYKSFWR 241
Query: 102 KGI------YIHVIRRRGDRIKVRYQHL 123
+G +++++ + G+++ + L
Sbjct: 242 RGFTFMVHDFVYILVQHGNKLVAYVEEL 269
>Os08g0431100 Bromo adjacent region domain containing protein
Length = 596
Score = 117 bits (292), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 57/134 (42%), Positives = 83/134 (61%), Gaps = 5/134 (3%)
Query: 108 VIRRRGDRIKVRYQHLQDPETPRANLEEWLLVTRTANPDPLCIRLSGRTRIRPHNMSERE 167
V++RRGD+IKVRY+ LQD + NLEEW+L+TR A PD L IR+ R +RP+++ +
Sbjct: 330 VLKRRGDKIKVRYEDLQDADE-TGNLEEWVLLTRIAKPDQLGIRIPERPMVRPYHVHSK- 387
Query: 168 NPSTIGVGTVIDGWLYDGWWEGILLKLVAMSTEFFPLSEFAGEKKMVLFHRDQLRHSLEW 227
+P + G+++D W GWWEGI+L+ + F GEK++ F D LRHS EW
Sbjct: 388 DPCSFDAGSIVDAWWNSGWWEGIVLQ---QGNDRRLQVYFPGEKQIADFCEDDLRHSREW 444
Query: 228 IDSKWKAFAHREDL 241
KW + R+D+
Sbjct: 445 AGGKWNSLGERKDI 458
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.134 0.404
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,092,162
Number of extensions: 441663
Number of successful extensions: 952
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 949
Number of HSP's successfully gapped: 6
Length of query: 362
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 260
Effective length of database: 11,709,973
Effective search space: 3044592980
Effective search space used: 3044592980
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 157 (65.1 bits)