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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0408500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Heavy metal transport/detoxification protein domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3 (0.0299) R2 : 0.00196
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0597 (0.063) R2dN8 : 0.00253 R2N8 : 0.00196
σ : 0.564
deviance : 145.98
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
139.02 0.554 3.01 -0.0205 0.174 0.287 0.118 1.06 -0.0535 11.1 19.82 115 -- --
142.33 0.556 2.98 0.177 0.192 0.187 -0.113 -- 0.00767 10.8 23.14 122 -- --
139.05 0.549 3.01 -0.00437 0.173 0.298 -- 1.04 -0.0528 10.9 19.77 111 -- --
142.37 0.556 2.98 0.168 0.184 0.189 -- -- 0.0184 10.8 23.2 121 -- --
140.84 0.553 3.01 -0.0205 -- 0.253 -- 1.04 -0.0587 -- 19.8 115 -- --
144.44 0.563 2.99 0.0864 0.146 -- -0.134 -- -0.0505 10 -- -- -- --
144.51 0.563 2.99 0.0809 0.148 -- -- -- -0.051 9.82 -- -- -- --
144.18 0.559 2.99 0.148 -- 0.162 -- -- 0.00613 -- 23.2 166 -- --
142.99 0.557 2.99 -- 0.181 0.164 -- -- 0.00311 10.5 23.2 121 -- --
145.82 0.564 3 0.0794 -- -- -- -- -0.0509 -- -- -- -- --
144.68 0.563 3 -- 0.148 -- -- -- -0.06 9.78 -- -- -- --
143.56 0.558 2.98 -- -- 0.134 -- -- -0.0192 -- 24.9 551 -- --
145.98 0.564 3 -- -- -- -- -- -0.0597 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 135.00 wind 9 90 > th dose independent rect. 13 2
2 135.00 wind 9 90 > th dose dependent rect. 13 2
5 135.04 wind 9 10 > th dose independent rect. 13 1
17 135.04 wind 9 10 > th dose dependent rect. 13 1
35 136.30 radiation 20 10 > th dose independent rect. 13 1
41 137.19 temperature 25 1440 < th dose dependent rect. 10 2
47 137.82 radiation 20 10 > th dose dependent rect. 13 1
53 138.49 temperature 20 90 < th dose independent rect. 6 21
56 138.61 temperature 20 90 < th dose independent rect. 6 23
59 138.80 temperature 25 270 < th dose dependent rect. 11 3
67 138.97 temperature 25 10 < th dose dependent rect. 6 11
72 139.07 temperature 20 90 > th dose independent rect. 5 23
97 139.18 temperature 20 90 > th dose independent rect. 13 23
103 139.26 temperature 20 90 < th dose independent rect. 21 22
109 139.32 temperature 25 90 < th dose dependent rect. 11 5
112 139.33 temperature 25 90 < th dose dependent rect. 21 20
116 139.36 radiation 40 10 < th dose independent sin 14 NA
120 139.36 temperature 25 90 < th dose dependent rect. 21 22
121 139.36 temperature 25 90 < th dose dependent rect. 6 23
123 139.38 temperature 20 90 < th dose independent rect. 19 23
128 139.40 temperature 25 90 < th dose dependent rect. 19 22
130 139.41 temperature 20 90 < th dose independent no NA NA
133 139.41 temperature 20 90 < th dose independent rect. 3 23
134 139.41 temperature 20 90 < th dose independent rect. 13 23
135 139.41 temperature 25 90 < th dose dependent rect. 1 23
136 139.42 temperature 20 90 < th dose independent rect. 17 23
138 139.43 temperature 20 90 < th dose independent rect. 15 23
155 139.47 temperature 20 90 < th dose independent rect. 1 23
156 139.47 temperature 20 90 < th dose independent rect. 9 23
157 139.47 temperature 20 90 < th dose independent rect. 11 23
158 139.47 temperature 25 10 < th dose dependent rect. 12 4
171 139.50 temperature 25 10 < th dose independent rect. 12 4
179 139.51 temperature 20 90 > th dose independent rect. 16 23
188 139.53 temperature 20 90 < th dose independent rect. 21 15
193 139.53 temperature 25 90 < th dose dependent rect. 9 23
199 139.55 temperature 25 270 < th dose independent rect. 12 2
217 139.57 temperature 25 90 < th dose dependent no NA NA
222 139.58 temperature 20 90 < th dose independent rect. 19 17
260 139.65 temperature 20 30 < th dose independent rect. 6 12
270 139.67 temperature 20 30 < th dose independent rect. 6 10
282 139.69 temperature 20 90 > th dose independent rect. 3 23
301 139.72 temperature 20 1440 < th dose independent rect. 23 1
310 139.72 temperature 25 30 < th dose dependent rect. 13 23
315 139.74 temperature 20 90 > th dose independent no NA NA
329 139.75 temperature 25 30 < th dose dependent rect. 15 23
377 139.82 temperature 25 10 < th dose dependent rect. 5 23
402 139.85 radiation 40 30 > th dose dependent sin 13 NA
405 139.86 temperature 20 90 < th dose independent rect. 7 4
411 139.87 temperature 20 720 < th dose independent rect. 6 18
442 139.92 temperature 20 1440 > th dose independent rect. 22 2
444 139.92 temperature 20 90 > th dose independent rect. 17 19
467 139.95 temperature 20 90 > th dose independent rect. 9 23
474 139.96 temperature 20 720 < th dose dependent rect. 22 1
488 139.99 temperature 20 90 < th dose dependent rect. 8 1
497 140.00 wind 1 90 < th dose dependent rect. 22 7
515 140.05 humidity 80 720 < th dose independent rect. 22 11
519 140.05 temperature 20 10 > th dose independent rect. 6 23
548 140.12 temperature 25 90 < th dose dependent sin 23 NA
561 140.15 humidity 80 720 > th dose independent rect. 23 10
567 140.16 temperature 20 90 < th dose independent rect. 7 2
597 140.18 temperature 20 90 < th dose independent sin 11 NA
635 140.20 temperature 25 270 < th dose dependent rect. 9 20
641 140.22 wind 7 10 > th dose independent rect. 13 5
651 140.23 temperature 20 90 > th dose independent rect. 1 23
686 140.27 temperature 20 1440 > th dose independent rect. 9 17
715 140.29 humidity 70 30 < th dose independent rect. 12 2
734 140.30 temperature 10 30 > th dose dependent rect. 9 23
750 140.33 temperature 20 1440 < th dose independent rect. 9 17
754 140.33 wind 1 14400 < th dose dependent rect. 4 2
760 140.34 temperature 20 90 > th dose independent rect. 21 23
763 140.34 temperature 25 10 < th dose dependent rect. 6 18
770 140.35 radiation 40 30 > th dose independent sin 13 NA
775 140.35 temperature 20 1440 > th dose independent rect. 13 13
807 140.36 temperature 10 30 > th dose dependent rect. 13 23
808 140.37 wind 5 10 > th dose independent rect. 8 1
813 140.37 wind 5 10 > th dose dependent rect. 8 1
815 140.37 humidity 80 1440 < th dose dependent rect. 6 1
851 140.40 temperature 20 1440 > th dose independent rect. 18 8
854 140.40 temperature 20 1440 < th dose independent rect. 13 13
857 140.40 temperature 20 90 > th dose independent rect. 23 23
890 140.42 temperature 25 720 < th dose dependent rect. 6 18
894 140.43 temperature 20 1440 < th dose independent rect. 18 8
908 140.44 humidity 80 720 < th dose independent rect. 3 5
928 140.45 wind 1 14400 < th dose dependent rect. 2 4
947 140.46 temperature 10 30 > th dose dependent rect. 3 23
991 140.50 atmosphere 1005 10 > th dose dependent rect. 13 1