BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0403000 Os09g0403000|AK111051
         (124 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os09g0403000  Conserved hypothetical protein                      144   1e-35
Os08g0429250  Conserved hypothetical protein                       72   1e-13

>Os09g0403000 Conserved hypothetical protein
          Length = 124

 Score =  144 bits (364), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 82/124 (66%), Positives = 82/124 (66%)

Query: 1   MLSRRTVSDMXXXXXXXXXXXXXXXXXXXXXXXVEVGVDGAVRLRMRLPKSEVARLMKDS 60
           MLSRRTVSDM                       VEVGVDGAVRLRMRLPKSEVARLMKDS
Sbjct: 1   MLSRRTVSDMASVVPAARAVAGGGGEPARRPSSVEVGVDGAVRLRMRLPKSEVARLMKDS 60

Query: 61  KDAAEAAERIMQLCVXXXXXXXXXXXXXXXXXXXPVSAMSGRKTSAMKKEKRTRFVALPD 120
           KDAAEAAERIMQLCV                   PVSAMSGRKTSAMKKEKRTRFVALPD
Sbjct: 61  KDAAEAAERIMQLCVARDQGGAGAGAAVTLAASGPVSAMSGRKTSAMKKEKRTRFVALPD 120

Query: 121 EIIG 124
           EIIG
Sbjct: 121 EIIG 124



>Os08g0429250 Conserved hypothetical protein
          Length = 216

 Score = 72.0 bits (175), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 41/75 (54%), Positives = 48/75 (64%), Gaps = 16/75 (21%)

Query: 1   MLSRRTVSDMXXXXXXXXXXXXXXXXXXXXXXXVEVGVDGAVRLRMRLPKSEVARLMKDS 60
           MLSRR+ SD+                       VE G  GAVRLRMRLPK+EVARL+K+S
Sbjct: 105 MLSRRSASDVAASPVSS----------------VEAGEGGAVRLRMRLPKAEVARLVKES 148

Query: 61  KDAAEAAERIMQLCV 75
           +DAAEAAE+IMQLCV
Sbjct: 149 RDAAEAAEKIMQLCV 163



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.319    0.130    0.342 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 1,973,239
Number of extensions: 35767
Number of successful extensions: 109
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 107
Number of HSP's successfully gapped: 2
Length of query: 124
Length of database: 17,035,801
Length adjustment: 88
Effective length of query: 36
Effective length of database: 12,440,969
Effective search space: 447874884
Effective search space used: 447874884
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 149 (62.0 bits)