Os09g0403000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os09g0403000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 129.8 | 0.535 | 8.91 | 0.484 | 0.626 | 1.48 | 0.401 | -0.902 | 0.0698 | 7.55 | 9.649 | 258 | -- | -- |
| 132.81 | 0.537 | 8.91 | 0.497 | 0.607 | 1.54 | 0.833 | -- | 0.0611 | 8.52 | 9.51 | 250 | -- | -- |
| 130.21 | 0.531 | 8.91 | 0.477 | 0.641 | 1.46 | -- | -0.911 | 0.0708 | 7.36 | 9.65 | 255 | -- | -- |
| 134.4 | 0.54 | 8.91 | 0.522 | 0.635 | 1.47 | -- | -- | 0.071 | 7.47 | 9.7 | 253 | -- | -- |
| 145.27 | 0.561 | 8.92 | 0.582 | -- | 1.46 | -- | -0.916 | 0.126 | -- | 8.769 | 330 | -- | -- |
| 166.89 | 0.606 | 8.93 | 0.564 | 1.68 | -- | -0.983 | -- | 0.0258 | 3.44 | -- | -- | -- | -- |
| 169.87 | 0.61 | 8.92 | 0.582 | 1.68 | -- | -- | -- | 0.0314 | 3.5 | -- | -- | -- | -- |
| 145.21 | 0.561 | 8.92 | 0.485 | -- | 1.66 | -- | -- | 0.11 | -- | 9.5 | 339 | -- | -- |
| 141.42 | 0.554 | 8.92 | -- | 0.62 | 1.51 | -- | -- | 0.0179 | 7.63 | 9.64 | 258 | -- | -- |
| 326.94 | 0.845 | 8.92 | 0.653 | -- | -- | -- | -- | 0.0759 | -- | -- | -- | -- | -- |
| 178.8 | 0.626 | 8.94 | -- | 1.69 | -- | -- | -- | -0.0334 | 3.5 | -- | -- | -- | -- |
| 150.21 | 0.571 | 8.92 | -- | -- | 1.74 | -- | -- | 0.0707 | -- | 9.272 | 383 | -- | -- |
| 338.17 | 0.858 | 8.94 | -- | -- | -- | -- | -- | 0.00346 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 121.78 | radiation | 20 | 270 | < th | dose independent | rect. | 11 | 10 |
| 2 | 122.18 | radiation | 30 | 270 | < th | dose dependent | rect. | 11 | 9 |
| 4 | 122.62 | radiation | 10 | 270 | < th | dose independent | rect. | 4 | 16 |
| 8 | 123.07 | radiation | 40 | 270 | < th | dose dependent | rect. | 11 | 22 |
| 10 | 123.42 | humidity | 70 | 270 | > th | dose independent | rect. | 2 | 18 |
| 12 | 123.60 | radiation | 30 | 270 | < th | dose dependent | rect. | 3 | 17 |
| 20 | 124.14 | radiation | 30 | 270 | < th | dose dependent | rect. | 13 | 20 |
| 21 | 124.21 | radiation | 20 | 270 | < th | dose independent | rect. | 11 | 22 |
| 23 | 124.27 | radiation | 10 | 270 | < th | dose independent | rect. | 13 | 20 |
| 31 | 124.53 | radiation | 20 | 90 | < th | dose dependent | sin | 20 | NA |
| 34 | 124.63 | humidity | 50 | 270 | > th | dose dependent | rect. | 3 | 17 |
| 43 | 125.00 | radiation | 20 | 270 | < th | dose independent | rect. | 1 | 20 |
| 67 | 125.76 | radiation | 10 | 270 | < th | dose independent | rect. | 24 | 23 |
| 95 | 126.22 | radiation | 40 | 270 | < th | dose dependent | rect. | 1 | 21 |
| 135 | 126.99 | radiation | 20 | 90 | < th | dose dependent | rect. | 11 | 12 |
| 138 | 127.02 | radiation | 20 | 90 | < th | dose dependent | rect. | 8 | 15 |
| 181 | 127.86 | radiation | 10 | 270 | < th | dose independent | sin | 23 | NA |
| 206 | 128.27 | temperature | 20 | 270 | > th | dose independent | rect. | 16 | 16 |
| 250 | 128.85 | radiation | 1 | 90 | > th | dose independent | rect. | 9 | 20 |
| 251 | 128.86 | radiation | 10 | 90 | < th | dose independent | sin | 20 | NA |
| 254 | 128.87 | radiation | 1 | 90 | > th | dose independent | rect. | 9 | 10 |
| 265 | 128.88 | radiation | 20 | 270 | < th | dose dependent | sin | 0 | NA |
| 349 | 129.62 | radiation | 10 | 90 | < th | dose independent | rect. | 8 | 15 |
| 361 | 129.68 | temperature | 15 | 270 | > th | dose dependent | rect. | 2 | 7 |
| 374 | 129.79 | temperature | 20 | 270 | > th | dose independent | rect. | 3 | 17 |
| 396 | 129.95 | radiation | 1 | 90 | > th | dose independent | sin | 21 | NA |
| 403 | 129.99 | humidity | 50 | 90 | > th | dose dependent | rect. | 17 | 18 |
| 418 | 130.10 | humidity | 50 | 270 | > th | dose independent | rect. | 3 | 17 |
| 447 | 130.51 | temperature | 30 | 90 | < th | dose independent | rect. | 17 | 16 |
| 477 | 130.82 | radiation | 10 | 270 | < th | dose independent | no | NA | NA |
| 557 | 131.49 | humidity | 60 | 90 | > th | dose independent | rect. | 17 | 16 |
| 598 | 131.72 | humidity | 90 | 270 | < th | dose dependent | rect. | 20 | 20 |
| 613 | 131.84 | temperature | 10 | 270 | > th | dose dependent | rect. | 17 | 15 |
| 656 | 132.23 | humidity | 70 | 90 | > th | dose independent | rect. | 13 | 9 |
| 679 | 132.40 | humidity | 50 | 90 | > th | dose dependent | rect. | 17 | 16 |
| 706 | 132.73 | temperature | 20 | 270 | > th | dose independent | rect. | 2 | 7 |
| 786 | 133.18 | radiation | 20 | 270 | < th | dose dependent | no | NA | NA |
| 801 | 133.28 | radiation | 10 | 10 | < th | dose dependent | rect. | 6 | 17 |
| 816 | 133.40 | humidity | 70 | 270 | > th | dose independent | rect. | 13 | 7 |
| 825 | 133.42 | radiation | 20 | 90 | < th | dose dependent | rect. | 3 | 23 |
| 860 | 133.71 | radiation | 1 | 270 | > th | dose dependent | sin | 23 | NA |
| 875 | 133.80 | temperature | 30 | 30 | < th | dose independent | rect. | 17 | 6 |
| 916 | 133.96 | radiation | 1 | 270 | > th | dose dependent | rect. | 8 | 9 |
| 939 | 134.00 | radiation | 10 | 4320 | < th | dose dependent | rect. | 24 | 5 |
| 944 | 134.00 | radiation | 1 | 270 | > th | dose dependent | rect. | 8 | 21 |
| 957 | 134.02 | humidity | 50 | 270 | > th | dose dependent | rect. | 15 | 18 |