BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0401300 Os09g0401300|AK065170
         (416 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os09g0401300  ZIM domain containing protein                       680   0.0  
Os08g0428400  ZIM domain containing protein                       263   2e-70

>Os09g0401300 ZIM domain containing protein
          Length = 416

 Score =  680 bits (1754), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/416 (85%), Positives = 355/416 (85%)

Query: 1   MERDFLGAIGKDEEQRRHAEERKESDYFXXXXXXXXXXMDWXXXXXXXXXXXXXXXXXXX 60
           MERDFLGAIGKDEEQRRHAEERKESDYF          MDW                   
Sbjct: 1   MERDFLGAIGKDEEQRRHAEERKESDYFGAGGGAAAAAMDWSFASRAALMSFRSSSSAAA 60

Query: 61  XXXXXXXXXXXXPHFSALDGAKMQQASHVLARQKSFGAESHGIPQYXXXXXVHGAHRGQP 120
                       PHFSALDGAKMQQASHVLARQKSFGAESHGIPQY     VHGAHRGQP
Sbjct: 61  AAAREETRELAFPHFSALDGAKMQQASHVLARQKSFGAESHGIPQYAAAAAVHGAHRGQP 120

Query: 121 PHVLNGARVIPASSPFNPNNPMFRVQSSPNLPNAVGAGGGAFKQPPFAMGNAVAGSTVGV 180
           PHVLNGARVIPASSPFNPNNPMFRVQSSPNLPNAVGAGGGAFKQPPFAMGNAVAGSTVGV
Sbjct: 121 PHVLNGARVIPASSPFNPNNPMFRVQSSPNLPNAVGAGGGAFKQPPFAMGNAVAGSTVGV 180

Query: 181 YGTRDMPKAKAAQLTIFYAGSVNVFNNVSPEKAQELMFLASRGSLPSAPTTVARMPEAHV 240
           YGTRDMPKAKAAQLTIFYAGSVNVFNNVSPEKAQELMFLASRGSLPSAPTTVARMPEAHV
Sbjct: 181 YGTRDMPKAKAAQLTIFYAGSVNVFNNVSPEKAQELMFLASRGSLPSAPTTVARMPEAHV 240

Query: 241 FPPAKVTVPEVSPTKPMMLQKPQLVSSPVPAISKPISVVSQATSLPRSASSSNVDSNVTK 300
           FPPAKVTVPEVSPTKPMMLQKPQLVSSPVPAISKPISVVSQATSLPRSASSSNVDSNVTK
Sbjct: 241 FPPAKVTVPEVSPTKPMMLQKPQLVSSPVPAISKPISVVSQATSLPRSASSSNVDSNVTK 300

Query: 301 SSGXXXXXXXXXXXXXXXETLATTTAAAIMPRAVPQARKASLARFLEKRKERVTTVAPYP 360
           SSG               ETLATTTAAAIMPRAVPQARKASLARFLEKRKERVTTVAPYP
Sbjct: 301 SSGPLVVPPTSLPPPAQPETLATTTAAAIMPRAVPQARKASLARFLEKRKERVTTVAPYP 360

Query: 361 LAKSPLESSDTMGSANDNKSSCTDIALSSNRDESLSLGQPRTISFCEESPSTKLQI 416
           LAKSPLESSDTMGSANDNKSSCTDIALSSNRDESLSLGQPRTISFCEESPSTKLQI
Sbjct: 361 LAKSPLESSDTMGSANDNKSSCTDIALSSNRDESLSLGQPRTISFCEESPSTKLQI 416



>Os08g0428400 ZIM domain containing protein
          Length = 427

 Score =  263 bits (672), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 159/286 (55%), Positives = 197/286 (68%), Gaps = 12/286 (4%)

Query: 136 FNPNNPMFRVQSSPNLPNAVGAGGGAFKQPPFAMGNAVAGSTVGVYGT-RDMPKAKAAQL 194
           F   NPM RV S PN+     AGG  ++   F++GN+VAGSTVGVYG  RD+   K  Q+
Sbjct: 149 FGHANPMLRVHSLPNV-----AGGSPYRNQSFSVGNSVAGSTVGVYGGPRDLQNPKVTQM 203

Query: 195 TIFYAGSVNVFNNVSPEKAQELMFLASRGSLPSAPTTVARMPEAHVFPPAKVTVPEVSPT 254
           TIFY G VNVF+N+  EKAQELM LASR S+PS P + AR  ++ +   AK+TVPE  P 
Sbjct: 204 TIFYDGLVNVFDNIPVEKAQELMLLASRASIPS-PPSAARKSDSPISAAAKLTVPEALPA 262

Query: 255 KPMMLQKPQLVSSPVPAISKPISVVSQATSLPRSASSSNVDSNVTKSSGXXXXXXXXXXX 314
           + +++QKP+     V  +S PI++VSQA +LP+S SSSN DS   KS G           
Sbjct: 263 RQIVVQKPEASVPLVSGVSNPITIVSQAVTLPKSFSSSN-DSAGPKSGGLPLAVTPLSQA 321

Query: 315 XXXXET-LATTTAAAIMPRAVPQARKASLARFLEKRKERVTTVAPYPLAKSPLESSDTMG 373
                  +ATT A+AIMPRAVPQARKASLARFLEKRKERV++VAPYP +KSPLESSDT+G
Sbjct: 322 SPSQPIPVATTNASAIMPRAVPQARKASLARFLEKRKERVSSVAPYPSSKSPLESSDTIG 381

Query: 374 S-ANDNKSSCTDIALSSNR-DESLSLGQPRTISF-CEESPSTKLQI 416
           S +  +KSSCTDI  S+N  ++SL LGQPR ISF  +E PSTKLQI
Sbjct: 382 SPSTPSKSSCTDITPSTNNCEDSLCLGQPRNISFSSQEPPSTKLQI 427



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.312    0.126    0.357 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,718,123
Number of extensions: 536605
Number of successful extensions: 2012
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 2006
Number of HSP's successfully gapped: 2
Length of query: 416
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 313
Effective length of database: 11,657,759
Effective search space: 3648878567
Effective search space used: 3648878567
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 157 (65.1 bits)