BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0388400 Os09g0388400|AK069644
         (373 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os09g0388400  Cof protein family protein                          768   0.0  

>Os09g0388400 Cof protein family protein
          Length = 373

 Score =  768 bits (1983), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/373 (100%), Positives = 373/373 (100%)

Query: 1   MAHQRQRDTSSEEELPREPWTVEKDVHLLNNLAAHGGEFQREPWVEKDDAASWTVEKDDV 60
           MAHQRQRDTSSEEELPREPWTVEKDVHLLNNLAAHGGEFQREPWVEKDDAASWTVEKDDV
Sbjct: 1   MAHQRQRDTSSEEELPREPWTVEKDVHLLNNLAAHGGEFQREPWVEKDDAASWTVEKDDV 60

Query: 61  PLVNNIVAHGDPEGSSNSLARSGGHLANVHEGAGMFYQPNFKYIFCDMDGTLLDSSGLVP 120
           PLVNNIVAHGDPEGSSNSLARSGGHLANVHEGAGMFYQPNFKYIFCDMDGTLLDSSGLVP
Sbjct: 61  PLVNNIVAHGDPEGSSNSLARSGGHLANVHEGAGMFYQPNFKYIFCDMDGTLLDSSGLVP 120

Query: 121 ETNAEAIRVARSRGVQTIIATGKSRPAVIEVLGKVNLAGTGGIVSESSPGVFLQGLLVYG 180
           ETNAEAIRVARSRGVQTIIATGKSRPAVIEVLGKVNLAGTGGIVSESSPGVFLQGLLVYG
Sbjct: 121 ETNAEAIRVARSRGVQTIIATGKSRPAVIEVLGKVNLAGTGGIVSESSPGVFLQGLLVYG 180

Query: 181 EGGQKLYQQNLDIEVCREALLYSLKHRVALVAFSQDDCYTTLDDHPLVDFFHVMYHEPKA 240
           EGGQKLYQQNLDIEVCREALLYSLKHRVALVAFSQDDCYTTLDDHPLVDFFHVMYHEPKA
Sbjct: 181 EGGQKLYQQNLDIEVCREALLYSLKHRVALVAFSQDDCYTTLDDHPLVDFFHVMYHEPKA 240

Query: 241 KIISDVDHFLSTIDIQKFVFLETPEVISSVLRPHWARRVDGKAQVVQAQGDVLEVVPLGT 300
           KIISDVDHFLSTIDIQKFVFLETPEVISSVLRPHWARRVDGKAQVVQAQGDVLEVVPLGT
Sbjct: 241 KIISDVDHFLSTIDIQKFVFLETPEVISSVLRPHWARRVDGKAQVVQAQGDVLEVVPLGT 300

Query: 301 SKGNGVKILLESLCASPDEVMALGDGKNDKEMLQLAGLGVALCNGCEVTKVVADVIGASN 360
           SKGNGVKILLESLCASPDEVMALGDGKNDKEMLQLAGLGVALCNGCEVTKVVADVIGASN
Sbjct: 301 SKGNGVKILLESLCASPDEVMALGDGKNDKEMLQLAGLGVALCNGCEVTKVVADVIGASN 360

Query: 361 DESGVAQAIYKYL 373
           DESGVAQAIYKYL
Sbjct: 361 DESGVAQAIYKYL 373



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.317    0.135    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,852,384
Number of extensions: 635220
Number of successful extensions: 1407
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1405
Number of HSP's successfully gapped: 1
Length of query: 373
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 271
Effective length of database: 11,709,973
Effective search space: 3173402683
Effective search space used: 3173402683
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 157 (65.1 bits)