Os09g0388400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cof protein family protein.
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Os09g0388400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Cof protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 129.34 | 0.534 | 3.39 | -0.118 | 0.658 | 1.14 | -0.384 | -2.1 | 1.15 | 10.2 | 10.53 | 4404 | -- | -- |
| 131 | 0.533 | 3.41 | 0.0326 | 0.639 | 1.33 | -0.521 | -- | 1.14 | 10.3 | 10.59 | 4403 | -- | -- |
| 127.96 | 0.527 | 3.4 | -0.259 | 0.644 | 1.12 | -- | -2.8 | 1.05 | 10.5 | 11.07 | 4403 | -- | -- |
| 131.63 | 0.534 | 3.41 | -0.016 | 0.662 | 1.32 | -- | -- | 1.11 | 10.1 | 11.05 | 4403 | -- | -- |
| 147.76 | 0.566 | 3.45 | -0.26 | -- | 1.56 | -- | -3.03 | 0.967 | -- | 11.08 | 4399 | -- | -- |
| 174.33 | 0.619 | 3.31 | -0.0178 | 0.964 | -- | -0.704 | -- | 1.55 | 10.5 | -- | -- | -- | -- |
| 176.35 | 0.622 | 3.31 | -0.0458 | 0.967 | -- | -- | -- | 1.55 | 10.5 | -- | -- | -- | -- |
| 152.15 | 0.574 | 3.46 | -0.0252 | -- | 1.73 | -- | -- | 0.992 | -- | 11.07 | 4400 | -- | -- |
| 131.58 | 0.534 | 3.42 | -- | 0.635 | 1.33 | -- | -- | 1.1 | 10.1 | 11.06 | 4401 | -- | -- |
| 233.75 | 0.714 | 3.34 | -0.0628 | -- | -- | -- | -- | 1.55 | -- | -- | -- | -- | -- |
| 176.41 | 0.621 | 3.31 | -- | 0.967 | -- | -- | -- | 1.56 | 10.5 | -- | -- | -- | -- |
| 152.17 | 0.575 | 3.46 | -- | -- | 1.74 | -- | -- | 0.996 | -- | 11.07 | 4400 | -- | -- |
| 233.85 | 0.714 | 3.34 | -- | -- | -- | -- | -- | 1.56 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 123.83 | temperature | 25 | 30 | > th | dose independent | rect. | 6 | 5 |
| 7 | 132.45 | temperature | 20 | 720 | > th | dose dependent | rect. | 4 | 3 |
| 10 | 134.30 | temperature | 25 | 10 | > th | dose dependent | rect. | 6 | 5 |
| 15 | 134.85 | temperature | 25 | 10 | > th | dose dependent | rect. | 2 | 9 |
| 23 | 135.75 | temperature | 25 | 30 | > th | dose independent | rect. | 1 | 10 |
| 28 | 136.02 | temperature | 25 | 10 | > th | dose dependent | sin | 6 | NA |
| 49 | 137.01 | temperature | 25 | 270 | > th | dose independent | rect. | 6 | 2 |
| 55 | 137.54 | wind | 9 | 4320 | > th | dose dependent | rect. | 13 | 1 |
| 92 | 140.10 | wind | 3 | 720 | < th | dose independent | rect. | 2 | 1 |
| 106 | 141.28 | wind | 9 | 4320 | > th | dose independent | rect. | 15 | 1 |
| 113 | 141.79 | temperature | 25 | 90 | > th | dose independent | rect. | 5 | 10 |
| 114 | 142.08 | wind | 3 | 720 | > th | dose independent | rect. | 2 | 2 |
| 115 | 142.30 | wind | 9 | 4320 | > th | dose independent | rect. | 13 | 1 |
| 118 | 142.41 | wind | 9 | 4320 | > th | dose dependent | rect. | 15 | 1 |
| 127 | 142.84 | wind | 9 | 4320 | < th | dose independent | rect. | 13 | 1 |
| 142 | 143.35 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 6 |
| 148 | 143.57 | wind | 9 | 4320 | > th | dose independent | rect. | 13 | 3 |
| 153 | 143.64 | wind | 9 | 4320 | < th | dose independent | rect. | 15 | 1 |
| 170 | 144.16 | temperature | 25 | 10 | > th | dose dependent | rect. | 6 | 9 |
| 227 | 145.31 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 3 |
| 228 | 145.34 | temperature | 20 | 720 | < th | dose independent | rect. | 4 | 1 |
| 231 | 145.34 | temperature | 25 | 720 | < th | dose dependent | rect. | 2 | 5 |
| 238 | 145.45 | temperature | 25 | 270 | < th | dose independent | rect. | 9 | 1 |
| 259 | 145.90 | temperature | 25 | 90 | > th | dose independent | sin | 3 | NA |
| 280 | 146.29 | temperature | 25 | 270 | < th | dose independent | rect. | 7 | 6 |
| 286 | 146.37 | temperature | 25 | 270 | < th | dose independent | rect. | 7 | 4 |
| 369 | 147.53 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 10 |
| 474 | 148.49 | temperature | 25 | 270 | < th | dose independent | rect. | 2 | 11 |
| 485 | 148.51 | temperature | 25 | 270 | > th | dose independent | rect. | 16 | 13 |
| 494 | 148.57 | wind | 9 | 4320 | > th | dose dependent | rect. | 18 | 22 |
| 583 | 149.25 | wind | 5 | 720 | < th | dose dependent | rect. | 2 | 1 |
| 660 | 149.74 | temperature | 25 | 90 | < th | dose independent | sin | 3 | NA |
| 762 | 150.25 | temperature | 20 | 10 | > th | dose dependent | rect. | 20 | 10 |
| 797 | 150.45 | wind | 9 | 4320 | > th | dose dependent | sin | 0 | NA |
| 829 | 150.57 | temperature | 25 | 90 | > th | dose independent | rect. | 20 | 9 |
| 866 | 150.75 | temperature | 25 | 10 | > th | dose dependent | rect. | 12 | 23 |
| 956 | 151.19 | wind | 9 | 4320 | > th | dose independent | rect. | 18 | 22 |