BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0381800 Os09g0381800|Os09g0381800
(323 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os09g0381800 611 e-175
Os09g0382080 412 e-115
Os09g0382000 349 1e-96
Os09g0382120 Zinc finger, BED-type predicted domain contain... 137 1e-32
Os12g0521200 86 3e-17
Os07g0624100 Similar to Transposase (Fragment) 86 5e-17
Os08g0217700 79 5e-15
Os05g0368800 67 1e-11
>Os09g0381800
Length = 323
Score = 611 bits (1576), Expect = e-175, Method: Compositional matrix adjust.
Identities = 298/323 (92%), Positives = 298/323 (92%)
Query: 1 MDFLPRGQLISIILGSIENWGLRDKVFSVVLDDEFVDDSVASNVESHLQKWNSHCANQSL 60
MDFLPRGQLISIILGSIENWGLRDKVFSVVLDDEFVDDSVASNVESHLQKWNSHCANQSL
Sbjct: 1 MDFLPRGQLISIILGSIENWGLRDKVFSVVLDDEFVDDSVASNVESHLQKWNSHCANQSL 60
Query: 61 FVVRYGTHLLDQVIQVGLDELDKIVEKSMNCSESTEGLTSSEVKYANYNYAASGKDWSCA 120
FVVRYGTHLLDQVIQVGLDELDKIVEKSMNCSESTEGLTSSEVKYANYNYAASGKDWSCA
Sbjct: 61 FVVRYGTHLLDQVIQVGLDELDKIVEKSMNCSESTEGLTSSEVKYANYNYAASGKDWSCA 120
Query: 121 RRICDTLEDFHRYMDIMHNFPCPVDLFEKVWQVKCNLQRKVDNPRDDAFATVVKKMQEKF 180
RRICDTLEDFHRYMDIMHNFPCPVDLFEKVWQVKCNLQRKVDNPRDDAFATVVKKMQEKF
Sbjct: 121 RRICDTLEDFHRYMDIMHNFPCPVDLFEKVWQVKCNLQRKVDNPRDDAFATVVKKMQEKF 180
Query: 181 KKCWKLCCLHFYMAMIVDPSYRLENIKLHVDLHTDTDYIRCMDDILLRLFDEYSGKVEDS 240
KKCWKLCCLHFYMAMIVDPSYRLENIKLHVDLHTDTDYIRCMDDILLRLFDEYSGKVEDS
Sbjct: 181 KKCWKLCCLHFYMAMIVDPSYRLENIKLHVDLHTDTDYIRCMDDILLRLFDEYSGKVEDS 240
Query: 241 NCTKETRNEINVSXXXXXXXXXXXXXXPICERPMTELDQYLQEPCLSGVCRTRXXXXXXX 300
NCTKETRNEINVS PICERPMTELDQYLQEPCLSGVCRTR
Sbjct: 241 NCTKETRNEINVSRDDDRLKYYRRYGYPICERPMTELDQYLQEPCLSGVCRTRSLHPLLS 300
Query: 301 XXXXGLFPTNLPCVGSPAADYNT 323
GLFPTNLPCVGSPAADYNT
Sbjct: 301 HLPPGLFPTNLPCVGSPAADYNT 323
>Os09g0382080
Length = 650
Score = 412 bits (1060), Expect = e-115, Method: Compositional matrix adjust.
Identities = 204/282 (72%), Positives = 228/282 (80%), Gaps = 1/282 (0%)
Query: 7 GQLISIILGSIENWGLRDKVFSVVLDDEFVDDSVASNVESHLQKWNSHCANQSLFVVRYG 66
G+L S+ILG+IE WGLRDKVFS+VLDDEFVDDSVASNV++HLQKWN HCA QS F
Sbjct: 326 GELSSVILGAIEKWGLRDKVFSIVLDDEFVDDSVASNVKAHLQKWNFHCAKQS-FQESNS 384
Query: 67 THLLDQVIQVGLDELDKIVEKSMNCSESTEGLTSSEVKYANYNYAASGKDWSCARRICDT 126
+ VIQVGLDELDKI+EKS+ CS+ EGLTSS VKY+N NYAASGKDW+CARRICDT
Sbjct: 385 HCKTELVIQVGLDELDKIMEKSVMCSKFMEGLTSSAVKYSNNNYAASGKDWTCARRICDT 444
Query: 127 LEDFHRYMDIMHNFPCPVDLFEKVWQVKCNLQRKVDNPRDDAFATVVKKMQEKFKKCWKL 186
LEDFHR +DIM NFPCPVDLF VW+VK +LQR+VDN RDD+F+TVVKKMQEKFK CWKL
Sbjct: 445 LEDFHRCIDIMPNFPCPVDLFYMVWKVKRDLQREVDNNRDDSFSTVVKKMQEKFKNCWKL 504
Query: 187 CCLHFYMAMIVDPSYRLENIKLHVDLHTDTDYIRCMDDILLRLFDEYSGKVEDSNCTKET 246
CCLHFY+AM+VDPS+RLE+IK V LHTDTDYI M DI L LFDEYSGKVED+NCT ET
Sbjct: 505 CCLHFYLAMVVDPSHRLEHIKFRVRLHTDTDYIHYMHDIFLNLFDEYSGKVEDTNCTSET 564
Query: 247 RNEINVSXXXXXXXXXXXXXXPICERPMTELDQYLQEPCLSG 288
R E+ V PICERPMTELDQYLQEP LSG
Sbjct: 565 RTEVGVDGGDDRLKYYRRYENPICERPMTELDQYLQEPRLSG 606
>Os09g0382000
Length = 739
Score = 349 bits (896), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 178/282 (63%), Positives = 203/282 (71%), Gaps = 29/282 (10%)
Query: 8 QLISIILGSIENWGLRDKVFSVVLDDEFVDDSVASNVESHLQKWNSHCANQSLFVVRYGT 67
+L +IL +IE+WGLRDKVFS+ LDDEF DDSVASNV+ HLQKWNSH +NQSLFVVRYGT
Sbjct: 380 ELSDVILRAIEDWGLRDKVFSITLDDEFADDSVASNVKDHLQKWNSHYSNQSLFVVRYGT 439
Query: 68 HLLDQVIQVGLDELDKIVEKSMNCSESTEGLTSSEVKYANYNYAASGKDWSCARRICDTL 127
+LLDQVIQVGLDELDK +EKSM CS+ TEG TSS V+ AN+NYA S KDWS AR ICDTL
Sbjct: 440 YLLDQVIQVGLDELDKSMEKSMKCSKFTEGFTSSAVRKANHNYAESAKDWSNARPICDTL 499
Query: 128 EDFHRYMDIMHNFPCPVDLFEKVWQVKCNLQRKVDNPRDDAFATVVKKMQEKFKKCWKLC 187
E FH+YMD MH+FP P LF+KVW VKC+LQRKVD +D AF+TV+KKMQ+KF+KCWKLC
Sbjct: 500 ESFHQYMDTMHDFPRPRHLFDKVWAVKCDLQRKVDIYKDGAFSTVLKKMQQKFEKCWKLC 559
Query: 188 CLHFYMAMIVDPSYRLENIKLHVDLHTDTDYIRCMDDILLRLFDEYSGKVEDSNCTKETR 247
C HFYMAM VDPSYRLE+I HV ED+N T ETR
Sbjct: 560 CFHFYMAMAVDPSYRLEHINFHV---------------------------EDTNSTSETR 592
Query: 248 NEINVSXX--XXXXXXXXXXXXPICERPMTELDQYLQEPCLS 287
NE+ V+ ICERPMTELDQYL EP LS
Sbjct: 593 NEVGVNRDDDRLKYYHQHQSEISICERPMTELDQYLLEPRLS 634
>Os09g0382120 Zinc finger, BED-type predicted domain containing protein
Length = 634
Score = 137 bits (344), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 76/147 (51%), Positives = 94/147 (63%), Gaps = 19/147 (12%)
Query: 8 QLISIILGSIENWGLRDKVFSVVLDDEFVDDSVASNVESHLQKWNSHCA------NQSLF 61
+L +IL +I +WGL KVFS+ LDD F+DDSVAS+V+ LQKWNS A NQSLF
Sbjct: 265 ELSMVILTAIRDWGLFGKVFSIALDDAFIDDSVASDVKDILQKWNSLHADENLSGNQSLF 324
Query: 62 VVRYGTHLLDQVIQVGLDELDKIVEKSMNCSESTEGLTSSE-------------VKYANY 108
VVRY THLLDQ+IQVGLDELDKI+EKS S+ + + S ++Y N
Sbjct: 325 VVRYATHLLDQIIQVGLDELDKIMEKSRKFSKLNKFMERSRKFSKYPKGDAPLALQYPNC 384
Query: 109 NYAASGKDWSCARRICDTLEDFHRYMD 135
YA S +DW A +IC L+DFHR D
Sbjct: 385 RYAPSSEDWGKADKICAILDDFHRQKD 411
>Os12g0521200
Length = 972
Score = 85.9 bits (211), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 71/276 (25%), Positives = 127/276 (46%), Gaps = 36/276 (13%)
Query: 9 LISIILGSIENWGLRDKVFSVVLDDEFVDDSVASNVESHL---QKWNSHCANQSLFVVRY 65
+ S +L +I+ W + +K+FSV LD+ +D++ +++++L K S+ N V+Y
Sbjct: 347 MFSEMLKAIQEWHIENKLFSVTLDNASANDTMMIHLKTNLVDGLKTMSNAINSIRESVKY 406
Query: 66 -------GTHLLDQVIQVGLDELDK--------------IVEKSMNCSESTEGLTSSEVK 104
G + + QVG+ + ++E S+ + E L ++
Sbjct: 407 ARSSQSRGQRFEEMIAQVGIKTNRRPSLDVSTRWNSTYLMLESSLLVRMAFEALDRHDI- 465
Query: 105 YANYNYAASGKDWSCARRICDTLEDFHRYMDIMHN--FPCPVDLFEKVWQVKCNLQRKVD 162
NY++ W A ++C L+ F+ + +P F ++W++K L ++
Sbjct: 466 --NYSHQPFDYQWIMAEKLCALLKVFYEATVAVSGTLYPTSTCYFHELWKIKMVLDKEAT 523
Query: 163 NPRDDAFATVVKKMQEKFKKCWKLCCLHFYMAMIVDPSYRLENIKLHVDL---HTDTDYI 219
N D A++VK+M+EKFKK W L +I DP Y+ + I+ + T Y+
Sbjct: 524 N-EDVTIASIVKEMKEKFKKYWDAQYLQICFPVIFDPRYKYKFIEFRLKSAFGAAATPYL 582
Query: 220 RCMDDILLRLFDEYSGKVEDS---NCTKETRNEINV 252
+ + + +LFDEYS K S N ET E NV
Sbjct: 583 KEIKSNMQKLFDEYSAKYGGSNNINSQPETSVEQNV 618
>Os07g0624100 Similar to Transposase (Fragment)
Length = 762
Score = 85.5 bits (210), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 80/330 (24%), Positives = 143/330 (43%), Gaps = 55/330 (16%)
Query: 8 QLISIILGSIENWGLRDKVFSVVLDDEFVDDSVASNVESHLQKWNSHCANQSLFVVRYGT 67
Q+ + +L I++W + DK+FSV LD+ +DS+A ++ +L+ + A L R
Sbjct: 319 QMFNAMLSCIQDWNIADKIFSVTLDNASANDSMAKLLKCNLKAKKTIPAGGKLLHNRCVA 378
Query: 68 HLLDQVIQVGLDELDKIV------EKSMNCSES----------TEGLT------------ 99
H+++ + + GL +D IV K M+ S S EG+T
Sbjct: 379 HVINLIAKDGLKVIDSIVCNIRESVKYMDNSPSRKEKFEEIIAQEGITCELHPTVDVCTH 438
Query: 100 -------------------SSEVKYANYNYAASGKDWSCARRICDTLEDFHRYMDIMHN- 139
S V+ NY YA S W A + L+ + ++
Sbjct: 439 WNSTYLMLNAAFPFMRAYASLVVQEKNYKYAPSPDQWERATIVSGILKVLYDATMVVSGS 498
Query: 140 -FPCPVDLFEKVWQVKCNLQRKVDNPRDDAFATVVKKMQEKFKKCWKLCCLHFYMAMIVD 198
+P F ++W++K L ++ N D A++VKKM++KF K W + + +I D
Sbjct: 499 LYPTSNLYFHEMWKIKLVLDKERSN-NDTEVASMVKKMKDKFDKYWLKSYKYLCIPVIFD 557
Query: 199 PSYRLENIKLHVDLHTDTDYIRCMDDILLR---LFDEYSGKVEDSNCT--KETRNEINVS 253
P ++ + ++ + + +D + R LF EYS K++DSN ++ + +++S
Sbjct: 558 PRFKFKFVEFRLGQAFGENAKERIDKVKKRMNMLFKEYSDKLKDSNANPLRQAEHVMSIS 617
Query: 254 XXXXXXXXXXXXXXPICERPMTELDQYLQE 283
+ E+ TELD YL+E
Sbjct: 618 ENDPMADWVQHISEQLSEQVDTELDIYLKE 647
>Os08g0217700
Length = 734
Score = 79.0 bits (193), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 72/299 (24%), Positives = 128/299 (42%), Gaps = 56/299 (18%)
Query: 9 LISIILGSIENWGLRDKVFSVVLDDEFVDDSVASNVESHLQKWNSHCANQSLFVVRYGTH 68
+ S +L +I+ W + +K+FSV LD+ V+D++ ++++++L + L R H
Sbjct: 293 MFSEMLKAIQEWHIENKLFSVTLDNASVNDTMMTHLKTNLVGKTMLPCDGVLLHFRCAAH 352
Query: 69 LLDQVIQVGLDELD----------KIVEKSMNCSESTEGL-------------------- 98
+ + ++Q GL + K V S + + E +
Sbjct: 353 IFNLIVQDGLKTMSNAINSIRESVKYVRSSQSRGQRFEEMIAQVGIKTNRRPSLDVSTRW 412
Query: 99 --------TSSEVKYA---------NYNYAASGKDWSCARRICDTLEDFHRYMDIMHN-- 139
+S V+ A NY + W+ A ++C L+ F+ +
Sbjct: 413 NSTYLMLESSLLVRMAFEALDRHDINYLHQPFDYQWTMAEKLCALLKVFYEATVAVCGML 472
Query: 140 FPCPVDLFEKVWQVKCNLQRKVDNPRDDAFATVVKKMQEKFKKCWKLCCLHFYMAMIVDP 199
+P F ++W++K L ++ N D A++VK+M+EKFKK W L +I DP
Sbjct: 473 YPTSTCYFHELWKIKMVLDKEATN-EDVTIASIVKEMKEKFKKYWDAQYLQICFPVIFDP 531
Query: 200 SYRLENIKLHVDL---HTDTDYIRCMDDILLRLFDEYSGKVEDS---NCTKETRNEINV 252
Y+ + I+ + T Y++ + + +LFDEYS K S N ET E NV
Sbjct: 532 RYKYKFIEFRLKSAFGAAATPYLKEIKSNMQKLFDEYSAKYGGSNNINSQPETSVEQNV 590
>Os05g0368800
Length = 312
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 74/154 (48%), Gaps = 9/154 (5%)
Query: 107 NYNYAASGKDWSCARRICDTLEDFHRYMDIMHN--FPCPVDLFEKVWQVKCNLQRKVDNP 164
NY + W+ A ++C L+ F+ + +P F ++W++K L ++ N
Sbjct: 12 NYLHQPFDYQWTMAEKLCALLKVFYEATVAVSGTLYPTSTCYFHELWKIKMVLDKEATN- 70
Query: 165 RDDAFATVVKKMQEKFKKCWKLCCLHFYMAMIVDPSYRLENIKLHVDLHTD---TDYIRC 221
D A++VK+M+EKFKK W L +I DP Y+ + I+ + T Y++
Sbjct: 71 EDVTIASIVKEMKEKFKKYWDAQYLQICFPIIFDPRYKYKFIEFRLKSAFGAAVTPYLKE 130
Query: 222 MDDILLRLFDEYSGKVEDS---NCTKETRNEINV 252
+ + +LFDEYS K S N ET E NV
Sbjct: 131 IKSNMQKLFDEYSAKYGGSNNINSQPETSVEQNV 164
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.137 0.433
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,375,216
Number of extensions: 404859
Number of successful extensions: 1006
Number of sequences better than 1.0e-10: 8
Number of HSP's gapped: 1007
Number of HSP's successfully gapped: 8
Length of query: 323
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 222
Effective length of database: 11,762,187
Effective search space: 2611205514
Effective search space used: 2611205514
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 156 (64.7 bits)