BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0363600 Os09g0363600|AK111628
         (279 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os09g0363600  Cytochrome cd1-nitrite reductase-like, C-termi...   444   e-125

>Os09g0363600 Cytochrome cd1-nitrite reductase-like, C-terminal haem d1 domain
           containing protein
          Length = 279

 Score =  444 bits (1143), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 222/272 (81%), Positives = 222/272 (81%)

Query: 8   GMDARGWDEAAYRRGILRERDLSCRTLFRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 67
           GMDARGWDEAAYRRGILRERDLSCRTLFR                               
Sbjct: 8   GMDARGWDEAAYRRGILRERDLSCRTLFRAVFFDHHDDDPDVLLAAASSDGSLASFSLSS 67

Query: 68  XXXXXXXHPTPQTHPDAAVSLVDPVCIVQAHSGPAYDVRFYPDSQQPLLFSXXXXXXXXX 127
                  HPTPQTHPDAAVSLVDPVCIVQAHSGPAYDVRFYPDSQQPLLFS         
Sbjct: 68  CISSSSSHPTPQTHPDAAVSLVDPVCIVQAHSGPAYDVRFYPDSQQPLLFSGGDDGRLRG 127

Query: 128 XXXHEMQSCLVPLSLQGDHLEPVLDLVNPQHEGPWGARSPIPENNAIAINKQEGSVYAAA 187
              HEMQSCLVPLSLQGDHLEPVLDLVNPQHEGPWGARSPIPENNAIAINKQEGSVYAAA
Sbjct: 128 WRWHEMQSCLVPLSLQGDHLEPVLDLVNPQHEGPWGARSPIPENNAIAINKQEGSVYAAA 187

Query: 188 GDACAYCWDVESGKCKMTFKGHTDYLHSIAVREANRQVVTGSEDGTARIWDCRSGKCTQV 247
           GDACAYCWDVESGKCKMTFKGHTDYLHSIAVREANRQVVTGSEDGTARIWDCRSGKCTQV
Sbjct: 188 GDACAYCWDVESGKCKMTFKGHTDYLHSIAVREANRQVVTGSEDGTARIWDCRSGKCTQV 247

Query: 248 IRPVKNKIFEGSWVSCVAIDASESWLVGCTSS 279
           IRPVKNKIFEGSWVSCVAIDASESWLVGCTSS
Sbjct: 248 IRPVKNKIFEGSWVSCVAIDASESWLVGCTSS 279



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.319    0.134    0.436 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,562,461
Number of extensions: 314017
Number of successful extensions: 1165
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1176
Number of HSP's successfully gapped: 1
Length of query: 279
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 179
Effective length of database: 11,814,401
Effective search space: 2114777779
Effective search space used: 2114777779
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 155 (64.3 bits)