BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0339100 Os09g0339100|Os09g0339100
         (128 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os09g0339100  Conserved hypothetical protein                      216   3e-57
Os11g0111466                                                       65   1e-11

>Os09g0339100 Conserved hypothetical protein
          Length = 128

 Score =  216 bits (551), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 104/118 (88%), Positives = 104/118 (88%)

Query: 1   MCSWDVLINGTSRRRSGAKEATEQPSIHWSVQKRINTLFPGTKKVDAANMLETLRSMGAF 60
           MCSWDVLINGTSRRRSGAKEATEQPSIHWSVQKRINTLFPGTKKVDAANMLETLRSMGAF
Sbjct: 1   MCSWDVLINGTSRRRSGAKEATEQPSIHWSVQKRINTLFPGTKKVDAANMLETLRSMGAF 60

Query: 61  RNCRLLGDGLTSELAGRLSSPSRWLFXXXXXXXXXXXXXXGAHFWSPLHNVVGCINCN 118
           RNCRLLGDGLTSELAGRLSSPSRWLF              GAHFWSPLHNVVGCINCN
Sbjct: 61  RNCRLLGDGLTSELAGRLSSPSRWLFAVSLLLVSAYYLVVGAHFWSPLHNVVGCINCN 118



>Os11g0111466 
          Length = 86

 Score = 65.5 bits (158), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 34/52 (65%), Positives = 40/52 (76%)

Query: 10 GTSRRRSGAKEATEQPSIHWSVQKRINTLFPGTKKVDAANMLETLRSMGAFR 61
          GT +RRS AKEATE+  IH S  K I++  PGTKKVDA+NM ET+RS GAFR
Sbjct: 32 GTVKRRSRAKEATERSPIHRSDLKSIDSPSPGTKKVDASNMSETVRSAGAFR 83



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.319    0.130    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,887,648
Number of extensions: 120753
Number of successful extensions: 209
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 209
Number of HSP's successfully gapped: 2
Length of query: 128
Length of database: 17,035,801
Length adjustment: 89
Effective length of query: 39
Effective length of database: 12,388,755
Effective search space: 483161445
Effective search space used: 483161445
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 150 (62.4 bits)