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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0339100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 1.93 (0.166) R2 : 0.158
β1 : 6.25 (0.98) R2dD : 3.56 R2D : -5.4
β2 : -- (--) R2dC : -- R2C : --
β3 : -75.2 (12.1) R2dE : 112 R2E : -119
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 462 (72.8) R2dD*E : 119 R2D*E : -112
γ1 : 0.371 (0.0846) R2dN8 : 0.0475 R2N8 : -1.58
σ : 0.74
deviance : 252.56
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_____
C
peak time of C : --
E
wheather : atmosphere
threshold : 994.8
memory length : 738
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
247.43 0.739 1.94 6.25 0.299 -75.5 0.0423 463 0.37 21.2 994.8 740 -- --
282.97 0.789 2.97 0.142 0.315 1.26 -0.038 -- 0.349 22.3 994.8 740 -- --
247.43 0.733 1.94 6.25 0.299 -75.2 -- 461 0.37 21.3 994.8 739 -- --
267.77 0.762 2.95 0.0828 0.295 1.68 -- -- 0.385 21.9 996.7 824 -- --
252.56 0.74 1.93 6.25 -- -75.2 -- 462 0.371 -- 994.8 738 -- --
284.55 0.791 2.97 0.15 0.316 -- -0.0219 -- 0.347 22.2 -- -- -- --
284.55 0.79 2.97 0.15 0.316 -- -- -- 0.347 22.2 -- -- -- --
272.72 0.769 2.95 0.0833 -- 1.78 -- -- 0.377 -- 996.5 809 -- --
267.92 0.762 2.96 -- 0.293 1.71 -- -- 0.367 21.8 996.8 831 -- --
290.62 0.797 2.96 0.155 -- -- -- -- 0.348 -- -- -- -- --
285.15 0.79 2.97 -- 0.317 -- -- -- 0.33 22.2 -- -- -- --
272.9 0.769 2.95 -- -- 1.8 -- -- 0.368 -- 996.5 809 -- --
291.25 0.797 2.96 -- -- -- -- -- 0.33 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 246.69 atmosphere 1000 10 < th dose independent rect. 1 4
5 246.82 atmosphere 1000 270 < th dose dependent rect. 24 1
6 246.94 atmosphere 1000 10 < th dose dependent rect. 1 4
8 247.08 temperature 25 270 > th dose dependent rect. 23 3
11 247.10 temperature 25 90 > th dose dependent rect. 1 3
14 247.27 temperature 25 30 > th dose independent rect. 1 3
15 247.37 atmosphere 1000 270 < th dose independent rect. 24 1
17 247.49 atmosphere 995 720 < th dose independent rect. 16 1
20 247.49 atmosphere 995 720 < th dose dependent rect. 16 1
53 248.25 atmosphere 995 720 < th dose dependent sin 10 NA
133 249.19 atmosphere 995 720 < th dose independent sin 11 NA
138 249.28 atmosphere 995 720 < th dose dependent no NA NA
352 249.35 atmosphere 995 720 > th dose independent sin 9 NA
405 249.81 atmosphere 995 720 > th dose independent sin 21 NA
411 250.12 atmosphere 995 720 < th dose independent no NA NA
631 250.57 atmosphere 995 720 > th dose independent sin 13 NA
642 251.02 atmosphere 995 720 > th dose independent no NA NA
713 253.56 atmosphere 995 720 > th dose independent sin 1 NA
771 257.44 radiation 10 10 < th dose dependent rect. 12 1
777 257.62 atmosphere 995 1440 > th dose independent rect. 15 14
782 257.82 radiation 10 10 < th dose independent rect. 11 2
830 259.89 atmosphere 1000 10 < th dose dependent rect. 1 9
852 260.58 humidity 90 90 < th dose independent rect. 2 2
918 261.45 atmosphere 995 1440 > th dose independent rect. 3 15
925 261.66 atmosphere 995 1440 > th dose independent rect. 3 13
928 261.71 atmosphere 995 1440 > th dose independent rect. 3 17
947 262.11 atmosphere 995 1440 > th dose independent rect. 15 18
951 262.39 wind 1 90 > th dose dependent rect. 2 2
958 262.53 atmosphere 995 1440 > th dose independent rect. 1 19
962 262.60 atmosphere 995 1440 > th dose independent rect. 1 17
976 262.86 wind 1 10 > th dose dependent rect. 3 1
990 263.14 atmosphere 1000 10 < th dose dependent sin 9 NA
992 263.15 atmosphere 1000 1440 < th dose dependent rect. 24 1